publish: Generate publications list from BibTeX file (#1507)

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UCL · Nov 14, 2024 · b4a1a90 · b4a1a90
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
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-# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: d541d363abb97faa63f88a7d8dfa3762
+# This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: 61ae878a12037c5ad381ee611b4e4239
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_data_sources.html b/_data_sources.html
@@ -6,17 +6,17 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Core Functions &mdash; TLOmodel 0.1.dev2460+gba5f1b9.d20241009 documentation</title>
+  <title>Core Functions &mdash; TLOmodel 0.1.dev2469+g28643ea.d20241114 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=d10597a4" />
-      <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=7ab3649f" />
+      <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=e59714d7" />
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-      <script src="_static/documentation_options.js?v=a61cc197"></script>
-      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/documentation_options.js?v=fa124278"></script>
+      <script src="_static/doctools.js?v=9bcbadda"></script>
       <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="index" title="Index" href="genindex.html" />
@@ -720,7 +720,7 @@ <h2>Road Traffic Injuries<a class="headerlink" href="#road-traffic-injuries" tit
 
   <div role="contentinfo">
     <p>
-      <span class="lastupdated">Last updated on Oct 09, 2024.
+      <span class="lastupdated">Last updated on Nov 14, 2024.
       </span></p>
   </div>
 

diff --git a/_downloads/23adaf6cf93219b8c57f084eec0ccd41/Epilepsy.docx b/_downloads/23adaf6cf93219b8c57f084eec0ccd41/Epilepsy.docx
diff --git a/_downloads/6a584f12d8a9d2773171142f50537bb3/publications.bib b/_downloads/6a584f12d8a9d2773171142f50537bb3/publications.bib
diff --git a/_downloads/d259ee2478d4ac9e09a19cb71e63d1a9/hsi_events.csv b/_downloads/d259ee2478d4ac9e09a19cb71e63d1a9/hsi_events.csv
diff --git a/_hsi_events.html b/_hsi_events.html
@@ -6,17 +6,17 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Alri &mdash; TLOmodel 0.1.dev2460+gba5f1b9.d20241009 documentation</title>
+  <title>Alri &mdash; TLOmodel 0.1.dev2469+g28643ea.d20241114 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=d10597a4" />
-      <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=7ab3649f" />
+      <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=e59714d7" />
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       <script src="_static/jquery.js?v=5d32c60e"></script>
       <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="_static/documentation_options.js?v=a61cc197"></script>
-      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/documentation_options.js?v=fa124278"></script>
+      <script src="_static/doctools.js?v=9bcbadda"></script>
       <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="index" title="Index" href="genindex.html" />
@@ -324,7 +324,7 @@ <h1>Tb<a class="headerlink" href="#tb" title="Link to this heading"></a></h1>
 
   <div role="contentinfo">
     <p>
-      <span class="lastupdated">Last updated on Oct 09, 2024.
+      <span class="lastupdated">Last updated on Nov 14, 2024.
       </span></p>
   </div>
 

diff --git a/_modules/index.html b/_modules/index.html
@@ -5,17 +5,17 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Overview: module code &mdash; TLOmodel 0.1.dev2460+gba5f1b9.d20241009 documentation</title>
+  <title>Overview: module code &mdash; TLOmodel 0.1.dev2469+g28643ea.d20241114 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=d10597a4" />
-      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=7ab3649f" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=e59714d7" />
       <link rel="stylesheet" type="text/css" href="../_static/theme_overrides.css?v=6ea10ece" />
 
 
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       <script src="../_static/jquery.js?v=5d32c60e"></script>
       <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="../_static/documentation_options.js?v=a61cc197"></script>
-      <script src="../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../_static/documentation_options.js?v=fa124278"></script>
+      <script src="../_static/doctools.js?v=9bcbadda"></script>
       <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
@@ -152,7 +152,7 @@ <h1>All modules for which code is available</h1>
 
   <div role="contentinfo">
     <p>
-      <span class="lastupdated">Last updated on Oct 09, 2024.
+      <span class="lastupdated">Last updated on Nov 14, 2024.
       </span></p>
   </div>
 

diff --git a/_modules/tlo/analysis/hsi_events.html b/_modules/tlo/analysis/hsi_events.html
@@ -5,17 +5,17 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>tlo.analysis.hsi_events &mdash; TLOmodel 0.1.dev2460+gba5f1b9.d20241009 documentation</title>
+  <title>tlo.analysis.hsi_events &mdash; TLOmodel 0.1.dev2469+g28643ea.d20241114 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=d10597a4" />
-      <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=7ab3649f" />
+      <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=e59714d7" />
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       <script src="../../../_static/jquery.js?v=5d32c60e"></script>
       <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="../../../_static/documentation_options.js?v=a61cc197"></script>
-      <script src="../../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../../_static/documentation_options.js?v=fa124278"></script>
+      <script src="../../../_static/doctools.js?v=9bcbadda"></script>
       <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
@@ -648,7 +648,7 @@ <h1>Source code for tlo.analysis.hsi_events</h1><div class="highlight"><pre>
 
   <div role="contentinfo">
     <p>
-      <span class="lastupdated">Last updated on Oct 09, 2024.
+      <span class="lastupdated">Last updated on Nov 14, 2024.
       </span></p>
   </div>
 

diff --git a/_modules/tlo/analysis/life_expectancy.html b/_modules/tlo/analysis/life_expectancy.html
@@ -5,17 +5,17 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>tlo.analysis.life_expectancy &mdash; TLOmodel 0.1.dev2460+gba5f1b9.d20241009 documentation</title>
+  <title>tlo.analysis.life_expectancy &mdash; TLOmodel 0.1.dev2469+g28643ea.d20241114 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=d10597a4" />
-      <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=7ab3649f" />
+      <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=e59714d7" />
       <link rel="stylesheet" type="text/css" href="../../../_static/theme_overrides.css?v=6ea10ece" />
 
 
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       <script src="../../../_static/jquery.js?v=5d32c60e"></script>
       <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="../../../_static/documentation_options.js?v=a61cc197"></script>
-      <script src="../../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../../_static/documentation_options.js?v=fa124278"></script>
+      <script src="../../../_static/doctools.js?v=9bcbadda"></script>
       <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
@@ -450,7 +450,7 @@ <h1>Source code for tlo.analysis.life_expectancy</h1><div class="highlight"><pre
 
   <div role="contentinfo">
     <p>
-      <span class="lastupdated">Last updated on Oct 09, 2024.
+      <span class="lastupdated">Last updated on Nov 14, 2024.
       </span></p>
   </div>
 

diff --git a/_modules/tlo/analysis/utils.html b/_modules/tlo/analysis/utils.html
@@ -5,17 +5,17 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>tlo.analysis.utils &mdash; TLOmodel 0.1.dev2460+gba5f1b9.d20241009 documentation</title>
+  <title>tlo.analysis.utils &mdash; TLOmodel 0.1.dev2469+g28643ea.d20241114 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=d10597a4" />
-      <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=7ab3649f" />
+      <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=e59714d7" />
       <link rel="stylesheet" type="text/css" href="../../../_static/theme_overrides.css?v=6ea10ece" />
 
 
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       <script src="../../../_static/jquery.js?v=5d32c60e"></script>
       <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="../../../_static/documentation_options.js?v=a61cc197"></script>
-      <script src="../../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../../_static/documentation_options.js?v=fa124278"></script>
+      <script src="../../../_static/doctools.js?v=9bcbadda"></script>
       <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
@@ -1534,7 +1534,7 @@ <h1>Source code for tlo.analysis.utils</h1><div class="highlight"><pre>
 
   <div role="contentinfo">
     <p>
-      <span class="lastupdated">Last updated on Oct 09, 2024.
+      <span class="lastupdated">Last updated on Nov 14, 2024.
       </span></p>
   </div>
 

diff --git a/_modules/tlo/cli.html b/_modules/tlo/cli.html
@@ -5,17 +5,17 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>tlo.cli &mdash; TLOmodel 0.1.dev2460+gba5f1b9.d20241009 documentation</title>
+  <title>tlo.cli &mdash; TLOmodel 0.1.dev2469+g28643ea.d20241114 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=d10597a4" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=7ab3649f" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
       <link rel="stylesheet" type="text/css" href="../../_static/theme_overrides.css?v=6ea10ece" />
 
 
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       <script src="../../_static/jquery.js?v=5d32c60e"></script>
       <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="../../_static/documentation_options.js?v=a61cc197"></script>
-      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/documentation_options.js?v=fa124278"></script>
+      <script src="../../_static/doctools.js?v=9bcbadda"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
@@ -938,7 +938,7 @@ <h1>Source code for tlo.cli</h1><div class="highlight"><pre>
 
   <div role="contentinfo">
     <p>
-      <span class="lastupdated">Last updated on Oct 09, 2024.
+      <span class="lastupdated">Last updated on Nov 14, 2024.
       </span></p>
   </div>
 

diff --git a/_modules/tlo/core.html b/_modules/tlo/core.html
@@ -5,17 +5,17 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>tlo.core &mdash; TLOmodel 0.1.dev2460+gba5f1b9.d20241009 documentation</title>
+  <title>tlo.core &mdash; TLOmodel 0.1.dev2469+g28643ea.d20241114 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=d10597a4" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=7ab3649f" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
       <link rel="stylesheet" type="text/css" href="../../_static/theme_overrides.css?v=6ea10ece" />
 
 
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       <script src="../../_static/jquery.js?v=5d32c60e"></script>
       <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="../../_static/documentation_options.js?v=a61cc197"></script>
-      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/documentation_options.js?v=fa124278"></script>
+      <script src="../../_static/doctools.js?v=9bcbadda"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
@@ -575,7 +575,7 @@ <h1>Source code for tlo.core</h1><div class="highlight"><pre>
 
   <div role="contentinfo">
     <p>
-      <span class="lastupdated">Last updated on Oct 09, 2024.
+      <span class="lastupdated">Last updated on Nov 14, 2024.
       </span></p>
   </div>
 

diff --git a/_modules/tlo/dependencies.html b/_modules/tlo/dependencies.html
@@ -5,17 +5,17 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>tlo.dependencies &mdash; TLOmodel 0.1.dev2460+gba5f1b9.d20241009 documentation</title>
+  <title>tlo.dependencies &mdash; TLOmodel 0.1.dev2469+g28643ea.d20241114 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=d10597a4" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=7ab3649f" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
       <link rel="stylesheet" type="text/css" href="../../_static/theme_overrides.css?v=6ea10ece" />
 
 
     <link rel="shortcut icon" href="../../_static/favicon.png"/>
       <script src="../../_static/jquery.js?v=5d32c60e"></script>
       <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="../../_static/documentation_options.js?v=a61cc197"></script>
-      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/documentation_options.js?v=fa124278"></script>
+      <script src="../../_static/doctools.js?v=9bcbadda"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
@@ -465,7 +465,7 @@ <h1>Source code for tlo.dependencies</h1><div class="highlight"><pre>
 
   <div role="contentinfo">
     <p>
-      <span class="lastupdated">Last updated on Oct 09, 2024.
+      <span class="lastupdated">Last updated on Nov 14, 2024.
       </span></p>
   </div>
 

diff --git a/_modules/tlo/docs.html b/_modules/tlo/docs.html
@@ -5,17 +5,17 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>tlo.docs &mdash; TLOmodel 0.1.dev2460+gba5f1b9.d20241009 documentation</title>
+  <title>tlo.docs &mdash; TLOmodel 0.1.dev2469+g28643ea.d20241114 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=d10597a4" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=7ab3649f" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
       <link rel="stylesheet" type="text/css" href="../../_static/theme_overrides.css?v=6ea10ece" />
 
 
     <link rel="shortcut icon" href="../../_static/favicon.png"/>
       <script src="../../_static/jquery.js?v=5d32c60e"></script>
       <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="../../_static/documentation_options.js?v=a61cc197"></script>
-      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/documentation_options.js?v=fa124278"></script>
+      <script src="../../_static/doctools.js?v=9bcbadda"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
@@ -700,7 +700,7 @@ <h1>Source code for tlo.docs</h1><div class="highlight"><pre>
 
   <div role="contentinfo">
     <p>
-      <span class="lastupdated">Last updated on Oct 09, 2024.
+      <span class="lastupdated">Last updated on Nov 14, 2024.
       </span></p>
   </div>
 

diff --git a/_modules/tlo/events.html b/_modules/tlo/events.html
@@ -5,17 +5,17 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>tlo.events &mdash; TLOmodel 0.1.dev2460+gba5f1b9.d20241009 documentation</title>
+  <title>tlo.events &mdash; TLOmodel 0.1.dev2469+g28643ea.d20241114 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=d10597a4" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=7ab3649f" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
       <link rel="stylesheet" type="text/css" href="../../_static/theme_overrides.css?v=6ea10ece" />
 
 
     <link rel="shortcut icon" href="../../_static/favicon.png"/>
       <script src="../../_static/jquery.js?v=5d32c60e"></script>
       <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="../../_static/documentation_options.js?v=a61cc197"></script>
-      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/documentation_options.js?v=fa124278"></script>
+      <script src="../../_static/doctools.js?v=9bcbadda"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
@@ -293,7 +293,7 @@ <h1>Source code for tlo.events</h1><div class="highlight"><pre>
 
   <div role="contentinfo">
     <p>
-      <span class="lastupdated">Last updated on Oct 09, 2024.
+      <span class="lastupdated">Last updated on Nov 14, 2024.
       </span></p>
   </div>