This repository contains command-line executables that estimate the edit distance between query and reference sequences using:
- Jaccard similarity of k-mer bags.
- Jaccard similarity of strobemer bags.
- Minstrobes implemented and tested.
- 10,000-nt sequences with pre-computed edit distance generated for comparison with seed-bag-comparison estimates ((/data/experiment3)[/data/experiment3_100_query_higher_res]).
- Randstrobes and Hybridstrobes