Update download-neo4j.yml

TaylorResearchLab · Nov 20, 2023 · 3c8c0f8 · 3c8c0f8
1 parent 9ac8bdf
commit 3c8c0f8
Showing 1 changed file with 10 additions and 16 deletions.
diff --git a/.github/workflows/download-neo4j.yml b/.github/workflows/download-neo4j.yml
@@ -24,33 +24,27 @@ jobs:
     - name: Download OSF files #osf -p 6jtc9 fetch Datasets/Datasets.zip Datasets.zip; unzip Datasets.zip; 
       run: |        
         echo 'Downloading OSF data...';
+        osf -p 6jtc9 fetch Datasets/Datasets.zip Datasets.zip; unzip Datasets.zip; ls PetagraphData; rm Datasets.zip;
         osf -p 6jtc9 fetch reduced_csvs_github_actions.zip reduced_csvs_github_actions.zip;
         unzip reduced_csvs_github_actions.zip; rm reduced_csvs_github_actions.zip;
         echo 'Finished Downloading and unzipping....';
         ls data;
-    - name: Give permissions
-      run: |
-          sudo chmod 777 -R /var/lib/neo4j/;
-          sudo chmod 777 -R /etc/neo4j;
-          sudo chmod 777 -R /var/log/neo4j/;
-          sudo chmod 777 -R /var/run/neo4j
-    - name: mv
-      run: |
-        mv reduced_csvs_github_actions/C*.csv  /var/lib/neo4j/import/;
-        ls /var/lib/neo4j/import/;
+
     - name: Build Petagraph # 
       run: |
+        sudo chmod 777 -R /var/lib/neo4j/; sudo chmod 777 -R /etc/neo4j;
+        sudo chmod 777 -R /var/log/neo4j/; sudo chmod 777 -R /var/run/neo4j
+        mv reduced_csvs_github_actions/C*.csv  /var/lib/neo4j/import/;
         rm -rf /var/lib/neo4j/data/databases/*
         rm -rf /var/lib/neo4j/data/transactions/*
         cd /var/lib/neo4j/
-        export HEAP_SIZE=1G
-        echo heapsize = $HEAP_SIZE
+        export HEAP_SIZE=1G; echo heapsize set to: $HEAP_SIZE
         neo4j-admin import --verbose --nodes=Concept="import/CUIs.csv" --relationships="import/CUI-CUIs.csv" --nodes=Code="import/CODEs.csv"    --relationships=CODE="import/CUI-CODEs.csv"  --skip-bad-relationships --skip-duplicate-nodes
-        
-    - name: neo4j commands # cat /etc/neo4j/neo4j.conf, neo4j-admin dbms set-initial-password neo4j2020
+        echo 'starting database...'
+        neo4j start
+    - name: neo4j commands # cat /etc/neo4j/neo4j.conf
       run: |
-           neo4j start
-           python3 tests/connect_neo4j.py
+        python3 tests/connect_neo4j.py