Update reduce_petagraph_csv_size_github_actions.py

TaylorResearchLab · Nov 16, 2023 · 1dcdc20 · 1dcdc20
1 parent cd657d9
commit 1dcdc20
Showing 1 changed file with 2 additions and 26 deletions.
diff --git a/tests/reduce_petagraph_csv_size_github_actions.py b/tests/reduce_petagraph_csv_size_github_actions.py
@@ -20,29 +20,8 @@
 #path='/Users/stearb/Desktop/DESKTOP_TRANSFER/R03_local/Petagraph_Sept2023/data/base_csvs/basecontext10Sep2023/'
 path='/var/lib/neo4j/import/'
 
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-# In[ ]:
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-# In[3]:
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 cuicodes = pd.read_csv(path+'CUI-CODEs.csv')
 
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-# In[4]:
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-#c=dict(Counter([i.split(':')[0] for i in cuicodes[':END_ID']]).most_common())
-#plt.bar(height=list(c.values()),x=range(len(list(c.values()))))
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-# In[5]:
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 dropsabs = ['HSCLO','MSH','MEDCIN','LNC','MTH','NDC','ICD10PCS','MTHSPL','REFSEQ','RXNORM','ICD10CM','ICPC2ICD10ENG','MDR',
 'MMSL','UWDA','CHV','CPT','SNOMEDCT_VET','GS','ORPHANET','NDDF','VANDF','UMD','MMX','ICD10AM','ICD9CM',
 'HCPT','MTHICD9','PDQ','CSP','NIC','LCH_NW','ICD10','NOC','DRUGBANK']
@@ -60,7 +39,7 @@
 cuicodes_reduced.to_csv('/var/lib/neo4j/import/CUI-CODEs.csv',index=False)
 
 del cuicodes
-
+'''
 print('HEREEEEEEEE')
 codes = pd.read_csv(path+'CODEs.csv')
 codes_reduced = codes[codes['SAB'].isin(cuicodes_reduced['sabs'].values)]
@@ -82,7 +61,7 @@
 
 
 cuicodes_reduced.drop('sabs',axis=1,inplace=True)
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+'''
 
 # In[9]:
 
@@ -102,9 +81,6 @@
 
 # # CUI-CUIs
 
-# In[10]:
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 cuicuis = pd.read_csv(path+'CUI-CUIs.csv')
 
 # DROP CUIs from START_ID and END_ID cols