Update download-neo4j.yml

TaylorResearchLab · Nov 19, 2023 · 0113cd8 · 0113cd8
1 parent c88071e
commit 0113cd8
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/.github/workflows/download-neo4j.yml b/.github/workflows/download-neo4j.yml
@@ -28,8 +28,8 @@ jobs:
     - name: Download OSF files #osf -p 6jtc9 fetch Datasets/Datasets.zip Datasets.zip; unzip Datasets.zip; 
       run: |        
         echo 'Downloading OSF data...';
-        osf -p 6jtc9 fetch Datasets/petagraph_v5.zip petagraph_v5.zip;
-        unzip petagraph_v5.zip; rm petagraph_v5.zip;
+        osf -p 6jtc9 fetch reduced_csvs_github_actions.zip reduced_csvs_github_actions.zip;
+        unzip reduced_csvs_github_actions.zip; rm reduced_csvs_github_actions.zip;
         echo 'Finished Downloading and unzipping....';
         ls data;
     - name: Give permissions
@@ -40,19 +40,19 @@ jobs:
           sudo chmod 777 -R /var/run/neo4j
     - name: mv
       run: |
-        rm import/CUI-TUIs.csv; rm import/CUI-SUIs.csv; rm import/CODE-SUIs.csv
-        mv import/C*.csv  /var/lib/neo4j/import/;
+        rm reduced_csvs_github_actions/CUI-TUIs.csv; rm reduced_csvs_github_actions/CUI-SUIs.csv; rm reduced_csvs_github_actions/CODE-SUIs.csv
+        mv reduced_csvs_github_actions/C*.csv  /var/lib/neo4j/import/;
         ls /var/lib/neo4j/import/;
     - name: df check 4
       run: df -h
-    - name: Build Petagraph # --relationships="import/CUI-CUIs.csv"
+    - name: Build Petagraph # 
       run: |
         rm -rf /var/lib/neo4j/data/databases/*
         rm -rf /var/lib/neo4j/data/transactions/*
         cd /var/lib/neo4j/
         export HEAP_SIZE=1G
         echo heapsize = $HEAP_SIZE
-        neo4j-admin import --verbose --nodes=Concept="import/CUIs.csv" --nodes=Code="import/CODEs.csv"    --relationships=CODE="import/CUI-CODEs.csv"  --skip-bad-relationships --skip-duplicate-nodes
+        neo4j-admin import --verbose --nodes=Concept="import/CUIs.csv" --relationships="import/CUI-CUIs.csv" --nodes=Code="import/CODEs.csv"    --relationships=CODE="import/CUI-CODEs.csv"  --skip-bad-relationships --skip-duplicate-nodes
         neo4j start