Update README.md #207
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| name: Petagraph Build Tests | |
| on: [push] | |
| jobs: | |
| job_1: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.10' | |
| - name: ports | |
| run: sudo netstat -tulpn | grep LISTEN | |
| - name: Download Neo4j | |
| run: | | |
| curl -fsSL https://debian.neo4j.com/neotechnology.gpg.key |sudo gpg --dearmor -o /usr/share/keyrings/neo4j.gpg | |
| echo "deb [signed-by=/usr/share/keyrings/neo4j.gpg] https://debian.neo4j.com stable 4.1" | sudo tee -a /etc/apt/sources.list.d/neo4j.list | |
| sudo apt update | |
| sudo apt install neo4j | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements-tests.txt | |
| - name: Download OSF files #osf -p 6jtc9 fetch Datasets/Datasets.zip Datasets.zip; unzip Datasets.zip; | |
| run: | | |
| echo 'Downloading OSF data...'; | |
| # osf -p 6jtc9 fetch Datasets/Petagraph_datasets.zip Petagraph_datasets.zip; | |
| # unzip Petagraph_datasets.zip; rm Petagraph_datasets.zip; | |
| # osf -p 6jtc9 fetch reduced_csvs_github_actions.zip reduced_csvs_github_actions.zip; | |
| # unzip reduced_csvs_github_actions.zip; rm reduced_csvs_github_actions.zip; | |
| # echo 'Finished Downloading and unzipping....'; | |
| ls data; | |
| - name: chmod | |
| run: | | |
| sudo chmod 777 -R /var/lib/neo4j/; sudo chmod 777 -R /etc/neo4j; | |
| sudo chmod 777 -R /var/lib/neo4j/data; | |
| sudo chmod 777 -R /var/log/neo4j/; sudo chmod 777 -R /var/run/neo4j | |
| - name: Build Petagraph | |
| run: | | |
| # mv reduced_csvs_github_actions/C*.csv /var/lib/neo4j/import/; | |
| rm -rf /var/lib/neo4j/data/databases/* | |
| rm -rf /var/lib/neo4j/data/transactions/* | |
| cd /var/lib/neo4j/ | |
| export HEAP_SIZE=1G; echo heapsize set to: $HEAP_SIZE; # --relationships="import/CUI-CUIs.csv" | |
| # neo4j-admin import --verbose --nodes=Concept="import/CUIs.csv" --nodes=Code="import/CODEs.csv" --relationships=CODE="import/CUI-CODEs.csv" --skip-bad-relationships --skip-duplicate-nodes | |
| - name: sed Unauth | |
| run: | | |
| #sed -i '/dbms.security.auth_enabled=false/s/^#//g' /etc/neo4j/neo4j.conf | |
| #sed -i '/dbms.connector.bolt.listen_address=:7687/s/^#//g' /etc/neo4j/neo4j.conf | |
| #sed -i '/dbms.connector.bolt.advertised_address=:7687/s/^#//g' /etc/neo4j/neo4j.conf | |
| sed -i '/dbms.default_listen_address=0.0.0.0/s/^#//g' /etc/neo4j/neo4j.conf | |
| #sed -i '/dbms.default_advertised_address=localhost/s/^#//g' /etc/neo4j/neo4j.conf | |
| #sed -i '/dbms.connector.bolt.enabled=true/c\dbms.connector.bolt.enabled=false' /etc/neo4j/neo4j.conf | |
| #sed -i '/dbms.connector.http.listen_address=:7474/s/^#//g' /etc/neo4j/neo4j.conf | |
| #sed -i '/dbms.connector.http.advertised_address=:7474/s/^#//g' /etc/neo4j/neo4j.conf | |
| cat /etc/neo4j/neo4j.conf | |
| echo '----------' | |
| #sudo rm /var/lib/neo4j/data/dbms/aut*; | |
| ls /var/lib/neo4j/data/dbms | |
| - run: sudo ss -tulpn #sudo netstat -tulpn | grep LISTEN | |
| - run: hostname -i; ulimit -n 40000 | |
| - name: Run Tests | |
| run: | | |
| neo4j-admin set-initial-password neo4j2020 | |
| sudo neo4j start; sleep 20; | |
| sudo ss -tulpn #sudo netstat -tulpn | grep LISTEN; | |
| echo '---------------' | |
| - run: | | |
| #/usr/bin/cypher-shell -a bolt://localhost:7687 -u neo4j -p neo4j; | |
| #/usr/bin/cypher-shell "ALTER CURRENT USER SET PASSWORD FROM neo4j TO neo4j2020"; | |
| #/usr/bin/cypher-shell "MATCH (n) RETURN COUNT(n)"; | |
| - run: | | |
| echo ''; #python tests/Petagraph_ingestion_test_auto.py #sudo /usr/bin/cypher-shell -a localhost -u neo4j -p neo4j; | |
| #- name: Upload Artifact | |
| # uses: actions/upload-artifact@v3 | |
| # with: | |
| # name: QC Report | |
| # path: .github/graph_test_logs/logfile.txt | |