update dockerfile

TalusBio · Oct 25, 2023 · 35ca22e · 35ca22e
1 parent 8736c56
commit 35ca22e
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Showing 2 changed files with 4 additions and 1 deletion.
diff --git a/Dockerfile b/Dockerfile
@@ -6,6 +6,8 @@ COPY --chown=$MAMBA_USER:$MAMBA_USER dist/*.whl /tmp/
 WORKDIR /app
 
 RUN micromamba install -y -n base -f /tmp/environment.yml && \
+    micromamba install -c conda-forge -n base gcc gxx_impl_linux-64 gxx_linux-64 binutils_impl_linux-64 && \
+    micromamba install -c conda-forge -n base binutils && \
     micromamba clean --all --yes
 
 ARG MAMBA_DOCKERFILE_ACTIVATE=1

diff --git a/pyproject.toml b/pyproject.toml
@@ -26,7 +26,8 @@ dependencies = [
     "lxml",
     "numpy",
     "numba",
-    "hdf5plugin",
+    "pyarrow",
+    "hdf5plugin>=3.10.0",
     "ms2ml @ git+https://github.com/wfondrie/ms2ml.git@encyclopedia-update"
 ]
 dynamic = ["version"]