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fix: GPR curation for transport reactions (8) #958

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fix: GPR curation for transport reactions (8) #958

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5948d30
fix: GPR curation for transport reactions (8)
JHL-452b Dec 31, 2024
3f06a62
chore: add macaw test result
JHL-452b Dec 31, 2024
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2 changes: 1 addition & 1 deletion data/testResults/README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ The file here contains results from the [MACAW](https://github.com/Devlin-Moyer/

The test results shown here were obtained by the GitHub Actions run in:

- **PR #830** (MACAW)
- **PR #958** (MACAW)
- **PR #883** (gene essentiality)

The results will be updated by any subsequent pull request. Summary results are shown as a comment in the corresponding pull request.
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61 changes: 23 additions & 38 deletions model/Human-GEM.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -154978,7 +154978,7 @@
- MAM02519e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -154995,7 +154995,7 @@
- MAM02519e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155267,7 +155267,7 @@
- MAM02896e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000105281 or ENSG00000115902"
- gene_reaction_rule: "ENSG00000105281 or ENSG00000115902"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155301,7 +155301,7 @@
- MAM02896e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155335,7 +155335,7 @@
- MAM02896e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155352,7 +155352,7 @@
- MAM03101e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155403,7 +155403,7 @@
- MAM02896e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155420,7 +155420,7 @@
- MAM02896e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000105281"
- gene_reaction_rule: "ENSG00000105281"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155437,7 +155437,7 @@
- MAM03135e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155454,7 +155454,7 @@
- MAM02993e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000105281 or ENSG00000115902"
- gene_reaction_rule: "ENSG00000105281 or ENSG00000115902"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155471,7 +155471,7 @@
- MAM02896e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155522,7 +155522,7 @@
- MAM02519e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155590,7 +155590,7 @@
- MAM02724e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155641,7 +155641,7 @@
- MAM02519e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155658,7 +155658,7 @@
- MAM02770e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155692,7 +155692,7 @@
- MAM03135e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155726,7 +155726,7 @@
- MAM02519e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155828,7 +155828,7 @@
- MAM03089e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155845,7 +155845,7 @@
- MAM03089e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155862,7 +155862,7 @@
- MAM03101e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155930,7 +155930,7 @@
- MAM03089e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155964,7 +155964,7 @@
- MAM03089e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156066,7 +156066,6 @@
- MAM02896e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156083,7 +156082,6 @@
- MAM02724e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156202,7 +156200,6 @@
- MAM03135e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156219,7 +156216,6 @@
- MAM02993e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156270,7 +156266,6 @@
- MAM03101e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156287,7 +156282,6 @@
- MAM03101e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156355,7 +156349,6 @@
- MAM03101e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156406,7 +156399,6 @@
- MAM03101e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156423,7 +156415,6 @@
- MAM03101e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156457,7 +156448,6 @@
- MAM03135e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156474,7 +156464,6 @@
- MAM03101e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156491,7 +156480,6 @@
- MAM03101e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156627,7 +156615,6 @@
- MAM02724e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156644,7 +156631,6 @@
- MAM03101e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156712,7 +156698,6 @@
- MAM03135e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156729,7 +156714,7 @@
- MAM02993e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000105281 or ENSG00000115902 or ENSG00000151012"
- gene_reaction_rule: "ENSG00000105281 or ENSG00000115902"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down