Fix: GPR curation for Arg_Pro_Tyr_metabolism

[JHL-452b]

Main improvements in this PR:

As proposed in #850

• Remove ENSG00000117592 from MAR03391;
• Remove ENSG00000117305 from MAR03935;
• Remove ENSG00000142920 from MAR04191;
• Remove ENSG00000184254 from MAR04683;
• Remove ENSG00000184254 from MAR04685;
• Remove ENSG00000184254 from MAR04686;
• Remove ENSG00000184254 from MAR04687;
• Remove ENSG00000118514, ENSG00000064763 from MAR06953;
• Remove ENSG00000064763 from MAR06954;
• Remove ENSG00000064763 from MAR06973;
• Remove ENSG00000198099, ENSG00000196616 from MAR08530;
• Remove ENSG00000077498 from MAR08630;
• Remove ENSG00000131873, ENSG00000123989, ENSG00000169826, ENSG00000198108, ENSG00000147408 from MAR12002;
• Remove ENSG00000131873, ENSG00000123989, ENSG00000169826, ENSG00000198108, ENSG00000147408 from MAR12003;
• Remove ENSG00000142920 from model as it's not connected to any reactions after this curation.

I hereby confirm that I have:

• Tested my code on my own computer for running the model
• Selected develop as a target branch
• Any removed reactions and metabolites have been moved to the corresponding deprecated identifier lists

[github-actions]

This PR has been automatically tested with GH Actions. Here is the output of the MACAW test:

Starting dead-end test...
 - Found 1514 dead-end metabolites.
 - Found 1319 reactions incapable of sustaining steady-state fluxes in either direction due to these dead-ends.
 - Found 1977 reversible reactions that can only carry steady-state fluxes in a single direction due to dead-ends.
Starting duplicate test...
 - Skipping redox duplicates because no redox_pairs and/or proton_ids were provided.
 - Found 447 reactions that were some type of duplicate:
   - 0 were completely identical to at least one other reaction.
   - 13 involve the same metabolites but go in the opposite direction or have the opposite reversibility as at least one other reaction.
   - 447 involve the same metabolites but with different coefficients as at least one other reaction.

This and a more detailed output from MACAW are also committed to data/macawResults/.

Note: In the case of multiple test runs, this post will be edited.