Fix: GPR curation for Glycosphingolipid metabolism

SysBioChalmers · Dec 29, 2024 · 51366ad · 51366ad
1 parent 008b443
commit 51366ad
Showing 1 changed file with 7 additions and 7 deletions.
diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml
@@ -121215,7 +121215,7 @@
           - MAM03091c: 1
       - lower_bound: -1000
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000130383 or ENSG00000156413 or ENSG00000171124"
+      - gene_reaction_rule: "ENSG00000130383 or ENSG00000171124"
       - rxnFrom: "HMRdatabase"
       - eccodes: "2.4.1.65"
       - subsystem:
@@ -121461,7 +121461,7 @@
           - MAM03111c: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000170340 or ENSG00000174684 or ENSG00000176383 or ENSG00000179913"
+      - gene_reaction_rule: "ENSG00000170340 or ENSG00000176383 or ENSG00000179913"
       - rxnFrom: "HMRdatabase"
       - eccodes:
           - "2.4.1.149"
@@ -122164,7 +122164,7 @@
           - MAM03107c: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000016864 or ENSG00000027847 or ENSG00000060642 or ENSG00000069943 or ENSG00000085998 or ENSG00000086062 or ENSG00000102595 or ENSG00000109586 or ENSG00000117411 or ENSG00000118017 or ENSG00000118276 or ENSG00000119227 or ENSG00000120820 or ENSG00000121578 or ENSG00000124091 or ENSG00000134910 or ENSG00000136731 or ENSG00000139044 or ENSG00000143315 or ENSG00000147162 or ENSG00000148288 or ENSG00000156966 or ENSG00000158470 or ENSG00000158850 or ENSG00000162630 or ENSG00000162885 or ENSG00000163527 or ENSG00000167080 or ENSG00000167889 or ENSG00000170340 or ENSG00000172318 or ENSG00000172461 or ENSG00000172728 or ENSG00000175711 or ENSG00000176383 or ENSG00000176597 or ENSG00000177191 or ENSG00000179913 or ENSG00000180549 or ENSG00000182272 or ENSG00000183778 or ENSG00000187676 or ENSG00000196371 or ENSG00000196968 or ENSG00000198488 or ENSG00000204007 or ENSG00000237172 or ENSG00000251287"
+      - gene_reaction_rule: "ENSG00000016864 or ENSG00000027847 or ENSG00000086062 or ENSG00000117411 or ENSG00000118017 or ENSG00000118276 or ENSG00000120820 or ENSG00000121578 or ENSG00000124091 or ENSG00000148288 or ENSG00000158470 or ENSG00000158850 or ENSG00000162630 or ENSG00000167080 or ENSG00000167889 or ENSG00000172318 or ENSG00000183778 or ENSG00000187676 or ENSG00000196968 or ENSG00000204007 or ENSG00000237172 or ENSG00000251287"
       - rxnFrom: "HMRdatabase"
       - eccodes: "2.4.1.-"
       - references: "PMID:7930586;PMID:7930586;PMID:7930586"
@@ -122181,7 +122181,7 @@
           - MAM03107g: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000016864 or ENSG00000027847 or ENSG00000060642 or ENSG00000069943 or ENSG00000085998 or ENSG00000086062 or ENSG00000102595 or ENSG00000109586 or ENSG00000117411 or ENSG00000118017 or ENSG00000118276 or ENSG00000119227 or ENSG00000120820 or ENSG00000121578 or ENSG00000124091 or ENSG00000134910 or ENSG00000136731 or ENSG00000139044 or ENSG00000143315 or ENSG00000147162 or ENSG00000148288 or ENSG00000156966 or ENSG00000158470 or ENSG00000158850 or ENSG00000162630 or ENSG00000162885 or ENSG00000163527 or ENSG00000167080 or ENSG00000167889 or ENSG00000170340 or ENSG00000172318 or ENSG00000172461 or ENSG00000172728 or ENSG00000175711 or ENSG00000176383 or ENSG00000176597 or ENSG00000177191 or ENSG00000179913 or ENSG00000180549 or ENSG00000182272 or ENSG00000183778 or ENSG00000187676 or ENSG00000196371 or ENSG00000196968 or ENSG00000198488 or ENSG00000204007 or ENSG00000237172 or ENSG00000251287"
+      - gene_reaction_rule: "ENSG00000016864 or ENSG00000027847 or ENSG00000085998 or ENSG00000086062 or ENSG00000109586 or ENSG00000117411 or ENSG00000118017 or ENSG00000118276 or ENSG00000119227 or ENSG00000120820 or ENSG00000121578 or ENSG00000124091 or ENSG00000148288 or ENSG00000156966 or ENSG00000158470 or ENSG00000158850 or ENSG00000162630 or ENSG00000163527 or ENSG00000167080 or ENSG00000172318 or ENSG00000172728 or ENSG00000182272 or ENSG00000183778 or ENSG00000196371 or ENSG00000196968 or ENSG00000204007 or ENSG00000237172 or ENSG00000251287"
       - rxnFrom: "HMRdatabase"
       - eccodes: "2.4.1.-"
       - references: "PMID:7930586;PMID:7930586;PMID:7930586"
@@ -122199,7 +122199,7 @@
           - MAM03107c: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000016864 or ENSG00000027847 or ENSG00000060642 or ENSG00000069943 or ENSG00000085998 or ENSG00000086062 or ENSG00000102595 or ENSG00000109586 or ENSG00000117411 or ENSG00000118017 or ENSG00000118276 or ENSG00000119227 or ENSG00000120820 or ENSG00000121578 or ENSG00000124091 or ENSG00000134910 or ENSG00000136731 or ENSG00000139044 or ENSG00000143315 or ENSG00000147162 or ENSG00000148288 or ENSG00000156966 or ENSG00000158470 or ENSG00000158850 or ENSG00000162630 or ENSG00000162885 or ENSG00000163527 or ENSG00000167080 or ENSG00000167889 or ENSG00000170340 or ENSG00000172318 or ENSG00000172461 or ENSG00000172728 or ENSG00000175711 or ENSG00000176383 or ENSG00000176597 or ENSG00000177191 or ENSG00000179913 or ENSG00000180549 or ENSG00000182272 or ENSG00000183778 or ENSG00000187676 or ENSG00000196371 or ENSG00000196968 or ENSG00000198488 or ENSG00000204007 or ENSG00000237172 or ENSG00000251287"
+      - gene_reaction_rule: "ENSG00000016864 or ENSG00000027847 or ENSG00000086062 or ENSG00000117411 or ENSG00000118017 or ENSG00000118276 or ENSG00000120820 or ENSG00000121578 or ENSG00000124091 or ENSG00000148288 or ENSG00000158470 or ENSG00000158850 or ENSG00000162630 or ENSG00000167080 or ENSG00000172318 or ENSG00000172461 or ENSG00000179913 or ENSG00000182272 or ENSG00000183778 or ENSG00000196371 or ENSG00000196968 or ENSG00000204007 or ENSG00000237172 or ENSG00000251287"
       - rxnFrom: "HMRdatabase"
       - eccodes: "2.4.1.-"
       - references: "PMID:11172001;PMID:11172001;PMID:11172001"
@@ -122250,7 +122250,7 @@
           - MAM03111c: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "(ENSG00000007541 and ENSG00000100564 and ENSG00000135845 and ENSG00000165195) or ENSG00000138641 or ENSG00000145337 or ENSG00000185808 or ENSG00000255072"
+      - gene_reaction_rule: "(ENSG00000007541 and ENSG00000100564 and ENSG00000135845 and ENSG00000165195) or ENSG00000145337 or ENSG00000185808 or ENSG00000255072"
       - rxnFrom: "HMRdatabase"
       - eccodes: "2.4.1.198"
       - subsystem:
@@ -122266,7 +122266,7 @@
           - MAM03111r: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "(ENSG00000007541 and ENSG00000100564 and ENSG00000135845 and ENSG00000165195) or ENSG00000138641 or ENSG00000145337 or ENSG00000185808 or ENSG00000255072"
+      - gene_reaction_rule: "(ENSG00000007541 and ENSG00000100564 and ENSG00000135845 and ENSG00000165195) or ENSG00000145337 or ENSG00000185808 or ENSG00000255072"
       - rxnFrom: "HMRdatabase"
       - eccodes: "2.4.1.198"
       - subsystem: