Merge pull request #958 from SysBioChalmers/Fix-Transport_reactions_8

fix: GPR curation for transport reactions (8)
SysBioChalmers · Jan 13, 2025 · 1f8ed20 · 1f8ed20
2 parents 3762bf3 + 2f85a64
commit 1f8ed20
Showing 1 changed file with 23 additions and 38 deletions.
diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml
@@ -154975,7 +154975,7 @@
           - MAM02519e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -154992,7 +154992,7 @@
           - MAM02519e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155264,7 +155264,7 @@
           - MAM02896e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000105281 or ENSG00000115902"
+      - gene_reaction_rule: "ENSG00000105281 or ENSG00000115902"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155298,7 +155298,7 @@
           - MAM02896e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155332,7 +155332,7 @@
           - MAM02896e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155349,7 +155349,7 @@
           - MAM03101e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155400,7 +155400,7 @@
           - MAM02896e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155417,7 +155417,7 @@
           - MAM02896e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000105281"
+      - gene_reaction_rule: "ENSG00000105281"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155434,7 +155434,7 @@
           - MAM03135e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155451,7 +155451,7 @@
           - MAM02993e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000105281 or ENSG00000115902"
+      - gene_reaction_rule: "ENSG00000105281 or ENSG00000115902"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155468,7 +155468,7 @@
           - MAM02896e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155519,7 +155519,7 @@
           - MAM02519e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155587,7 +155587,7 @@
           - MAM02724e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155638,7 +155638,7 @@
           - MAM02519e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155655,7 +155655,7 @@
           - MAM02770e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155689,7 +155689,7 @@
           - MAM03135e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155723,7 +155723,7 @@
           - MAM02519e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155825,7 +155825,7 @@
           - MAM03089e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155842,7 +155842,7 @@
           - MAM03089e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155859,7 +155859,7 @@
           - MAM03101e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155927,7 +155927,7 @@
           - MAM03089e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155961,7 +155961,7 @@
           - MAM03089e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156063,7 +156063,6 @@
           - MAM02896e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156080,7 +156079,6 @@
           - MAM02724e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156199,7 +156197,6 @@
           - MAM03135e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156216,7 +156213,6 @@
           - MAM02993e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156267,7 +156263,6 @@
           - MAM03101e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156284,7 +156279,6 @@
           - MAM03101e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156352,7 +156346,6 @@
           - MAM03101e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156403,7 +156396,6 @@
           - MAM03101e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156420,7 +156412,6 @@
           - MAM03101e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156454,7 +156445,6 @@
           - MAM03135e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156471,7 +156461,6 @@
           - MAM03101e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156488,7 +156477,6 @@
           - MAM03101e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156624,7 +156612,6 @@
           - MAM02724e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156641,7 +156628,6 @@
           - MAM03101e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156709,7 +156695,6 @@
           - MAM03135e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156726,7 +156711,7 @@
           - MAM02993e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000105281 or ENSG00000115902 or ENSG00000151012"
+      - gene_reaction_rule: "ENSG00000105281 or ENSG00000115902"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem: