chore: version 1.3.3

SysBioChalmers · Nov 2, 2018 · f97831f · f97831f
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diff --git a/README.rst b/README.rst
@@ -11,7 +11,7 @@ The **GECKO** toolbox is a Matlab/Python package for enhancing a **G**\ enome-sc
 - ``geckomat``: Matlab+Python scripts to fetch online data and build/simulate enzyme-constrained models.
 - ``geckopy``: a Python package which can be used with `cobrapy <https://opencobra.github.io/cobrapy/>`_ to obtain a ecYeastGEM model object, optionally adjusted for provided proteomics data.
 
-Last update: 2018-10-12
+Last update: 2018-11-02
 
 This repository is administered by Benjamin J. Sanchez (`@BenjaSanchez <https://github.com/benjasanchez>`_), Division of Systems and Synthetic Biology, Department of Biology and Biological Engineering, Chalmers University of Technology.
 

diff --git a/docs/conf.py b/docs/conf.py
@@ -54,9 +54,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = u'1.3.2'
+version = u'1.3.3'
 # The full version, including alpha/beta/rc tags.
-release = u'1.3.2'
+release = u'1.3.3'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/geckopy/HISTORY.rst b/geckopy/HISTORY.rst
@@ -1,6 +1,18 @@
 History
 =======
 
+1.3.3 (2018-11-02)
+------------------
+
+* Fixes:
+    * Fixes #15: Binary results from the model (``ecModel.mat``, ``ecModel_batch.mat`` & ``enzData.mat``) are no longer stored in repo (PR #52).
+    * Misc. fixes in the biomass composition + GAM calculations (PR #53).
+* Refactoring:
+    * Speed improvement in misc. functions (PR #49).
+    * Added ``sumProtein.m`` for easier use when creating new ecModels (PR #53).
+* Documentation:
+    * Documented better which scripts/data should be changed and which are optional when adapting geckomat to produce a new ecModel (PR #53).
+
 1.3.2 (2018-10-12)
 ------------------
 * Features:

diff --git a/geckopy/geckopy/__init__.py b/geckopy/geckopy/__init__.py
@@ -7,4 +7,4 @@
 
 __author__ = 'Benjamin Sanchez'
 __email__ = '[email protected]'
-__version__ = '1.3.2'
+__version__ = '1.3.3'
diff --git a/geckopy/setup.cfg b/geckopy/setup.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 1.3.2
+current_version = 1.3.3
 commit = True
 tag = False
 

diff --git a/geckopy/setup.py b/geckopy/setup.py
@@ -19,7 +19,7 @@
 
 setup(
     name='geckopy',
-    version='1.3.2',
+    version='1.3.3',
     description="Methods for using the GECKO model with cobrapy",
     long_description=readme + '\n\n' + history,
     author="Benjamin Sanchez",