treeSim

Simulates a Host and Guest Tree, and Sequences on top

Name		Name	Last commit message	Last commit date
Latest commit History 108 Commits
BranchRelaxer.py		BranchRelaxer.py
ConfigParser.py		ConfigParser.py
CreateSequences.py		CreateSequences.py
Fasta.py		Fasta.py
GuestTreeGen.py		GuestTreeGen.py
HostTreeGen.py		HostTreeGen.py
OrthoAnalysis.py		OrthoAnalysis.py
OrthoNJ.py		OrthoNJ.py
README.md		README.md
RetrieveOrthogroup.py		RetrieveOrthogroup.py
Similarity.py		Similarity.py
TreeSearch.py		TreeSearch.py
TreeSim.py		TreeSim.py
TreeUtils.py		TreeUtils.py
Utils.py		Utils.py
drawReconciliation.py		drawReconciliation.py
ilp_generator.py		ilp_generator.py
rootSequence.py		rootSequence.py
stats.py		stats.py
test.py		test.py
testSuite.py		testSuite.py
zf_shilpa.hmm		zf_shilpa.hmm

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