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Workflow
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Copy the upload_everything.R script, located in
ScottishCovidResponse/SCRCdata/inst/templates -
Edit the submission script to work with the
human/infection/SARS-CoV-2/scotland/mortalitydataset. Run the upload script (to upload metadata to the data repository) and save it here:ScottishCovidResponse/SCRCdata/R/inst/scripts/scotgov_deaths.R -
Upload source data to the Boydorr server, here:
/srv/ftp/scrc/human/infection/SARS-CoV-2/scotland/mortality/1.20200716.0.csv -
Upload the data processing function (to convert the *.csv file to an *.h5 file) to the SCRCdata repository, here:
ScottishCovidResponse/SCRCdata/R/process_scotgov_deaths.R -
Upload the data product to the Boydorr server:
/srv/ftp/scrc/human/infection/SARS-CoV-2/scotland/mortality/1.20200716.0.h5