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adamjtaylor authored Oct 17, 2023
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# nf-artist

<p align="left" width="100%">
<img src="https://github.com/Sage-Bionetworks-Workflows/nf-artist/assets/14945787/eb87ad98-383c-468e-9853-f749606be734)" width="33%%" />
</p>

[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A523.04.0-23aa62.svg)](https://www.nextflow.io/)
[![Launch on Nextflow Tower](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Nextflow%20Tower-%234256e7)](https://tower.nf/launch?pipeline=https://github.com/Sage-Bionetworks-Workflows/nf-artist)
[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)
![GitHub Actions CI Status](https://github.com/Sage-Bionetworks-Workflows/nf-artist/actions/workflows/ci.yml/badge.svg)
![GitHub Actions Workflow Test Status](https://github.com/Sage-Bionetworks-Workflows/nf-artist/actions/workflows/nextflow.yml/badge.svg)
![Container Scan Status](https://github.com/Sage-Bionetworks-Workflows/nf-artist/actions/workflows/scan-images.yml/badge.svg)

![GitHub Actions CI Status](https://github.com/Sage-Bionetworks-Workflows/nf-artist/actions/workflows/ci.yml/badge.svg)
![GitHub Actions Workflow Test Status](https://github.com/Sage-Bionetworks-Workflows/nf-artist/actions/workflows/nextflow.yml/badge.svg)
![Container Scan Status](https://github.com/Sage-Bionetworks-Workflows/nf-artist/actions/workflows/scan-images.yml/badge.svg)

A NextFlow pipeline to generate visualizations of multiplexed tissue imaging datasets. Initially developed for the [HTAN Data Portal](data.humantumoratlas.org).

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