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Perturbations with categorical target data #101

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bnglomics opened this issue Oct 8, 2024 · 1 comment
Open

Perturbations with categorical target data #101

bnglomics opened this issue Oct 8, 2024 · 1 comment

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@bnglomics
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Hi there,
Is there a way readily change the *_id_assoc_bayes/ttest.yaml file to account for multiple levels of "drug". For example, I have survey data where the responses are coded as integers from 1 to 5, corresponding to my interventions.. Thank you!!

defaults:

  • identify_associations_bayes

batch_size: 10

num_refits: 40

target_dataset: survey_data
target_value: 1 <-- how would I change this
save_refits: True

model:
num_hidden:
- 1000
num_latent: 150

training_loop:
lr: 1e-4
num_epochs: 40

@bnglomics
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ok, never mind! I can do one-hot encoding as in the paper :)

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