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@RSC-RP

Research Scientific Computing

We increase the impact of Seattle Children's biomedical research by making cutting-edge computational biology and supercomputing accessible

Research Scientific Computing

We increase the impact of Seattle Children’s Research Institute (SCRI) biomedical research by making cutting-edge computational biology and supercomputing accessible to Seattle Children’s Hospital (SCH)

Bioinformatics Collaboration and Consultation

The Research Scientific Computing Team takes great pleasure in offering our consultation and collaborative support to facilitate your research needs. Our team consists of distinguished computational biologists and data scientists who possess extensive expertise in various domains of biomedical research, including all major Next Generation Sequencing (NGS) methodologies, single-cell analytics, variant calling, proteomics, metabolomics, machine learning, and more. See below for details on specific areas.

General support

Along with the services described below, we stand ready to collaborate with you to take on any new technology or research challenges that may arise in your endeavors.

  • Single-cell RNA-seq Profiling and Analysis
  • Single-cell ATAC-seq or 10x Multiome Profiling and Analysis
  • RNA-seq Analysis
  • Epigenetic and Transcription factor profiling
  • Whole genome and whole exome sequencing analysis
  • Spatial Transcriptomic Analysis
  • Microbiome Analysis
  • Long-read sequencing analysis
  • Proteomic Analysis

Seattle Chilren's

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  1. .github .github Public

    Mission Statement

  2. mack_d_2023.04.13_iPSC_neuromuscular_scRNAseq mack_d_2023.04.13_iPSC_neuromuscular_scRNAseq Public

    Time-course analysis of scRNA-seq from iPSC motor neurons.

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  3. sarek_Aug2023 sarek_Aug2023 Public

    Forked from nf-core/sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

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  4. bulk_rnaseq_fusion_nf bulk_rnaseq_fusion_nf Public

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  5. IGNITE IGNITE Public

    repo to demo for 2023.11 IGNITE

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  6. rnaseq_count_nf rnaseq_count_nf Public

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