fix linux directories? #26
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| name: Full test suite | |
| on: [push,pull_request] | |
| jobs: | |
| run_tests: | |
| runs-on: ${{ matrix.os }} | |
| if: | | |
| !contains(github.event.head_commit.message, '+ONLYDOCS') && | |
| !contains(github.event.head_commit.message, '+NOFULLTEST') | |
| strategy: | |
| matrix: | |
| python-version: ['3.10', '3.11', '3.12'] | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| include: | |
| - os: ubuntu-latest | |
| label: linux-64 | |
| prefix: /usr/share/miniconda3/envs/test | |
| - os: macos-latest | |
| label: osx-64 | |
| prefix: /Users/runner/miniconda3/envs/test | |
| - os: windows-latest | |
| label: win-64 | |
| prefix: C:\Miniconda3\envs\test | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get current date | |
| id: date | |
| run: echo "::set-output name=date::$(date +'%Y-%m-%d')" | |
| - name: Install dependencies on Linux | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y libncurses5-dev libncursesw5-dev libncursesw5 libncurses5 | |
| - uses: conda-incubator/[email protected] | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: test${{ matrix.python-version }} | |
| use-mamba: true | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v4 | |
| with: | |
| path: ${{ matrix.prefix }}${{ matrix.python-version }} | |
| key: ${{ matrix.label }}-conda-py${{ matrix.python-version }}-${{ hashFiles('.github/environment.yml') }}-${{ steps.date.outputs.date }}-${{ env.CACHE_NUMBER }} | |
| env: | |
| # Increase this value to reset cache if etc/example-environment.yml has not changed | |
| CACHE_NUMBER: 1 | |
| id: cache | |
| - name: Update environment | |
| run: mamba env update -n test${{ matrix.python-version }} -f .github/environment.yml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: print package info | |
| shell: bash -l {0} | |
| run: | | |
| conda info -a | |
| conda list | |
| - name: Install MSNoise-DB | |
| shell: bash -l {0} | |
| run: | | |
| pip install . | |
| - name: Test suite | |
| shell: bash -l {0} | |
| run: | | |
| msnoisedb download-and-extract ./ | |
| ls | |
| msnoisedb install-db | |
| msnoisedb start-server& | |
| msnoisedb create-database bubu | |
| msnoisedb show-databases | |
| msnoisedb stop-server |