fix linux directories? #25
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Full test suite | |
| on: [push,pull_request] | |
| jobs: | |
| run_tests: | |
| runs-on: ${{ matrix.os }} | |
| if: | | |
| !contains(github.event.head_commit.message, '+ONLYDOCS') && | |
| !contains(github.event.head_commit.message, '+NOFULLTEST') | |
| strategy: | |
| matrix: | |
| python-version: ['3.10', '3.11', '3.12'] | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| include: | |
| - os: ubuntu-latest | |
| label: linux-64 | |
| prefix: /usr/share/miniconda3/envs/test | |
| - os: macos-latest | |
| label: osx-64 | |
| prefix: /Users/runner/miniconda3/envs/test | |
| - os: windows-latest | |
| label: win-64 | |
| prefix: C:\Miniconda3\envs\test | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get current date | |
| id: date | |
| run: echo "::set-output name=date::$(date +'%Y-%m-%d')" | |
| - name: Install dependencies on Linux | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y libncurses5-dev libncursesw5-dev | |
| cd /usr/lib64 | |
| ln -s libncurses.so.6 libncurses.so.5 | |
| ln -s libtinfo.so.6 libtinfo.so.5 | |
| - uses: conda-incubator/[email protected] | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: test${{ matrix.python-version }} | |
| use-mamba: true | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v4 | |
| with: | |
| path: ${{ matrix.prefix }}${{ matrix.python-version }} | |
| key: ${{ matrix.label }}-conda-py${{ matrix.python-version }}-${{ hashFiles('.github/environment.yml') }}-${{ steps.date.outputs.date }}-${{ env.CACHE_NUMBER }} | |
| env: | |
| # Increase this value to reset cache if etc/example-environment.yml has not changed | |
| CACHE_NUMBER: 1 | |
| id: cache | |
| - name: Update environment | |
| run: mamba env update -n test${{ matrix.python-version }} -f .github/environment.yml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: print package info | |
| shell: bash -l {0} | |
| run: | | |
| conda info -a | |
| conda list | |
| - name: Install MSNoise-DB | |
| shell: bash -l {0} | |
| run: | | |
| pip install . | |
| - name: Test suite | |
| shell: bash -l {0} | |
| run: | | |
| msnoisedb download-and-extract ./ | |
| ls | |
| msnoisedb install-db | |
| msnoisedb start-server& | |
| msnoisedb create-database bubu | |
| msnoisedb show-databases | |
| msnoisedb stop-server |