Fixed a bug causing errors when sending networks from STRING to

Cytoscape for some species.
RBVI · May 29, 2024 · 1a971ea · 1a971ea
1 parent 80f1395
commit 1a971ea
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Showing 3 changed files with 4 additions and 2 deletions.
diff --git a/pom.xml b/pom.xml
@@ -18,7 +18,7 @@
 	<packaging>bundle</packaging>
 	<name>${bundle.symbolicName}</name>
 
-	<version>2.1.0</version>
+	<version>2.1.1</version>
 
 	<build>
 		<plugins>

diff --git a/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/ProteinQueryTask.java b/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/ProteinQueryTask.java
@@ -120,7 +120,9 @@ public ProteinQueryTask(final StringManager manager) {
 	public void run(TaskMonitor monitor) {
 		monitor.setTitle("STRING Protein Query");
 		Species sp = Species.getSpecies(species);
-		if (taxonID != -1 && !sp.isCustom()) {
+		// if (taxonID != -1 && sp != null && !sp.isCustom()) {
+		// Fallback to species taxonID if species name was not enough to find our species
+		if (sp == null && taxonID != -1) {
 			for (Species s : speciesList) {
 				if (s.getTaxId() == taxonID) {
 					if (!s.toString().equals(species)) {

diff --git a/stringApp-2.1.0.jar → stringApp-2.1.1.jar b/stringApp-2.1.0.jar → stringApp-2.1.1.jar