COMPILES and currently works
The game files can be found at: http://www.megateamfortress.com/files/mtffull-sharks.zip
The compiled qwprogs.dat is included in the fortress filder along with the server config scripts. The server configs are setup to run with any modification, though you may want to change the server name and rcon to somthing. (head kick will cause the server to crash after some time, so it's turned off, because it's useless for a CE server)
To compile MEGA TEAM FORTRESS
git clone git://github.com/graphitemaster/gmqcc.git
cd gmqcc
make
copy the compiled gmqcc into the MegaTF_ClanEdition folder
sudo chmod -R 777 MegaTF_ClanEdition
cd MegaTF_ClanEdition
./gmqcc -std=fteqcc -O3
or for windows use fteqccgui.exe and select O2 optimizations and apply