Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Remove dependency on st_pages #514

Merged
merged 3 commits into from
Dec 19, 2024
Merged

Remove dependency on st_pages #514

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
2147b8e
Remove dependency on st_pages
RobbinBouwmeester Dec 12, 2024
3eecaa0
Delete 5_quant_LFQ_peptidoform_DDA.py
RobbinBouwmeester Dec 19, 2024
4040fce
Create 5_Quant_LFQ_peptidoform_DDA.py
RobbinBouwmeester Dec 19, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 0 additions & 2 deletions webinterface/_base.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,6 @@

import pages.texts.proteobench_builder as pbb
import streamlit as st
from st_pages import show_pages_from_config

import proteobench

Expand All @@ -20,7 +19,6 @@ def __init__(self) -> None:

self._preface()
self._main_page()
show_pages_from_config()

def _preface(self):
st.markdown(
Expand Down
1 change: 1 addition & 0 deletions ...e/pages/module_pages/quant_lfq_ion_DDA.py → webinterface/pages/2_Quant_LFQ_ion_DDA.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,7 @@

class StreamlitUI:
def __init__(self):
print("page loaded")
self.variables_dda_quant: VariablesDDAQuant = VariablesDDAQuant()
self.texts: Type[WebpageTexts] = WebpageTexts
self.texts.ShortMessages.title = "DDA Ion quantification"
Expand Down
0 ...ges/module_pages/quant_lfq_ion_DIA_AIF.py → ...nterface/pages/3_Quant_LFQ_ion_DIA_AIF.py
View file
Open in desktop
File renamed without changes.
0 ...odule_pages/quant_lfq_ion_DIA_diaPASEF.py → ...ace/pages/4_Quant_LFQ_ion_DIA_diaPASEF.py
View file
Open in desktop
File renamed without changes.
8 changes: 4 additions & 4 deletions ...module_pages/quant_lfq_peptidoform_DDA.py → ...face/pages/5_Quant_LFQ_peptidoform_DDA.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
import logging
from typing import Any, Dict, Type

import pages.texts.proteobench_builder as pbb
import pages_dir.texts.proteobench_builder as pbb
import streamlit as st
from pages.base_pages.quant import QuantUIObjects
from pages.pages_variables.Quant.lfq.peptidoform.DDA.peptidoform_variables import (
from pages_dir.base_pages.quant import QuantUIObjects
from pages_dir.pages_variables.Quant.lfq.peptidoform.DDA.peptidoform_variables import (
VariablesDDAQuant,
)
from pages.texts.generic_texts import WebpageTexts
from pages_dir.texts.generic_texts import WebpageTexts

from proteobench.io.parsing.parse_settings import ParseSettingsBuilder
from proteobench.modules.quant.lfq.peptidoform.DDA.quant_lfq_peptidoform_DDA import (
Expand Down
0 ...le_pages/quant_lfq_peptidoform_DIA_AIF.py → .../pages/6_Quant_LFQ_peptidoform_DIA_AIF.py
View file
Open in desktop
File renamed without changes.
281 changes: 0 additions & 281 deletions webinterface/pages/TEMPLATE.py
View file
Open in desktop

This file was deleted.

12 changes: 6 additions & 6 deletions webinterface/pages/base_pages/quant.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -79,9 +79,9 @@ def initialize_main_slider(self) -> None:
if self.variables_quant.slider_id_uuid not in st.session_state.keys():
st.session_state[self.variables_quant.slider_id_uuid] = uuid.uuid4()
if st.session_state[self.variables_quant.slider_id_uuid] not in st.session_state.keys():
st.session_state[
st.session_state[self.variables_quant.slider_id_uuid]
] = self.variables_quant.default_val_slider
st.session_state[st.session_state[self.variables_quant.slider_id_uuid]] = (
self.variables_quant.default_val_slider
)

def generate_main_selectbox(self) -> None:
"""Creates the selectbox for the Streamlit UI."""
Expand Down Expand Up @@ -116,9 +116,9 @@ def initialize_submitted_slider(self) -> None:
if self.variables_quant.slider_id_submitted_uuid not in st.session_state.keys():
st.session_state[self.variables_quant.slider_id_submitted_uuid] = uuid.uuid4()
if st.session_state[self.variables_quant.slider_id_submitted_uuid] not in st.session_state.keys():
st.session_state[
st.session_state[self.variables_quant.slider_id_submitted_uuid]
] = self.variables_quant.default_val_slider
st.session_state[st.session_state[self.variables_quant.slider_id_submitted_uuid]] = (
self.variables_quant.default_val_slider
)

def display_submitted_results(self) -> None:
"""Displays the results section of the page for submitted data."""
Expand Down
Empty file removed webinterface/pages/module_pages/__init__.py
View file
Open in desktop
Empty file.
4 changes: 3 additions & 1 deletion webinterface/pages/pages_variables/Quant/lfq/ion/DIA/ion_diaPASEF.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -41,7 +41,9 @@ class VariablesDIAQuantdiaPASEF:
download_selector_id_uuid: str = "download_selector_id_dia_quant_diaPASEF"
table_id_uuid: str = "table_id_dia_quant_diaPASEF"

additional_params_json: str = "../webinterface/configuration/dia_quant.json" # TODO: make a new file for this, and adapt the configuration file for each module.
additional_params_json: str = (
"../webinterface/configuration/dia_quant.json" # TODO: make a new file for this, and adapt the configuration file for each module.
)

description_module_md: str = "pages/markdown_files/Quant/lfq/ion/DIA/diaPASEF/introduction.md"
description_files_md: str = "pages/markdown_files/Quant/lfq/ion/DIA/diaPASEF/file_description.md"
Expand Down
Loading