-
Notifications
You must be signed in to change notification settings - Fork 11
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
149aad0
commit 010fc0f
Showing
7 changed files
with
122 additions
and
17 deletions.
There are no files selected for viewing
29 changes: 29 additions & 0 deletions
29
...arsing/io_parse_settings/Quant/lfq/peptidoform/DDA/parse_settings_proteomediscoverer.toml
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,29 @@ | ||
[mapper] | ||
"Protein Accessions" = "Proteins" | ||
"Sequence" = "sequence" | ||
"Modifications" = "modifications" | ||
|
||
[condition_mapper] | ||
"Abundances (Normalized): F1: Sample, ConditionA" = "A" | ||
"Abundances (Normalized): F2: Sample, ConditionA" = "A" | ||
"Abundances (Normalized): F3: Sample, ConditionA" = "A" | ||
"Abundances (Normalized): F4: Sample, ConditionB" = "B" | ||
"Abundances (Normalized): F5: Sample, ConditionB" = "B" | ||
"Abundances (Normalized): F6: Sample, ConditionB" = "B" | ||
|
||
[run_mapper] | ||
"Abundances (Normalized): F1: Sample, ConditionA" = "Condition_A_Sample_Alpha_01" | ||
"Abundances (Normalized): F2: Sample, ConditionA" = "Condition_A_Sample_Alpha_02" | ||
"Abundances (Normalized): F3: Sample, ConditionA" = "Condition_A_Sample_Alpha_03" | ||
"Abundances (Normalized): F4: Sample, ConditionB" = "Condition_B_Sample_Alpha_01" | ||
"Abundances (Normalized): F5: Sample, ConditionB" = "Condition_B_Sample_Alpha_02" | ||
"Abundances (Normalized): F6: Sample, ConditionB" = "Condition_B_Sample_Alpha_03" | ||
|
||
[species_mapper] | ||
"_YEAST" = "YEAST" | ||
"_ECOLI" = "ECOLI" | ||
"_HUMAN" = "HUMAN" | ||
|
||
[general] | ||
"contaminant_flag" = "Cont_" | ||
"decoy_flag" = true |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
|
@@ -37,6 +37,7 @@ def __init__( | |
"..", | ||
"..", | ||
"..", | ||
"..", | ||
"io", | ||
"parsing", | ||
"io_parse_settings", | ||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters