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@achubaty achubaty released this 01 Aug 02:22
v1.0.0
f83398a
  • no longer rely on side effects to update objects in global environment; instead uses simulation environments (#185) (not backwards compatible!)
  • sample modules rewritten to use simulation enviroments (#185) (not backwards compatible!).
  • redefined simList class:
    • new superclass .simList contains all previous simList slots except .envir
    • class simList extends .simList by adding slot .envir
    • new class simList_ extends .simList by adding slot .list
    • simList_ can be used internally to save a simList object,
      because saving lists of objects to file is more reliable that saving environments.
  • fastshp can be installed from Rforge as a CRAN-like repository (instead of relying on devtools::install_github)
  • software requirements changed: depends R (>=3.2.0)
  • moved data.table, grid, raster, and sp from Depends to Imports (#207).
  • add archivist, ff, ffbase to Imports; add lubridate to Imports (with #151)
  • removed magrittr from Imports (%>% is now exported by igraph)
  • most external methods/classes imported using importFrom; except methods, graphics, igraph, and utils (because of methods/classes which are not exported) (#201)
  • simulations now use timeunit (instead of timestep) specified in metadata (#151)
  • defineModule requires timeunit to be a character string instead of numeric (with #151)
  • simulation checkpointing fixed (#191, #130)
  • ls and ls.str can now be used with simList objects to list objects in the simulation environment
  • objs returns a list containing all the objects in the simulation enviroment
  • new function splitRaster to divide RasterLayer into several tiles
  • new function normPath (extracted from checkPath) to more strictly normalize filepaths without checking that they exist.
  • new function classFilter to filter list of objects by their type
  • new function packages to get all packages required by a simulation
  • new function rndstr to generate random strings
  • new function append_attr to append list items and keep their attributes
  • improved loadPackages
  • improved .objectNames
  • defineParameter now accepts min, max, and description values (#172; #175)
  • defineModule better handles NA values (#138)
  • various Plot improvements.
  • new plotting funcions to produce overview diagrams of simulations (#181; #184):
    • eventDiagram shows Gantt chart of event sequences
    • moduleDiagram shows igraph network diagram of dependencies
    • objectDiagram shows sequence diagram of object dependencies between modules
  • improved simList show and debug methods (#57; #73)
  • improvements to loadFiles:
    • use data.table
    • allow package::function notation in load (#174)
    • bug fixes
  • added "metamodules" which specify module groups (#176)
  • improved test coverage (see #139)
  • all functions imported explicity (@importFrom). 3 entire packages imported: methods, graphics, igraph (because of classes which are not exported from igraph) (#201)
  • removed package dependencies on raster, sp, data.table, grid. Use importFrom instead (#207).
  • improved documentation and vignettes
  • added cache mechanism to hash function calls to spades (#206)
  • fixed progress bar bug (#147)
  • prepend copyright info to LICENSE and README (with #140)
  • various other bug fixes
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