allow `initalB` to be NA/NULL to use LANDIS-II approach#62

Merged

achubaty merged 60 commits intoPredictiveEcology:developmentfrom CeresBarros:initialBglobal

Jun 21, 2022

+728-457

Commits on Feb 25, 2022

minor fixes
CeresBarros
committed
automatic retrieval of citation style for manual
CeresBarros
committed
couple of refs added
CeresBarros
committed
re-knit
CeresBarros
committed
merge from development
CeresBarros
committed
add module name to chunks for bookdown
CeresBarros
committed
first header at start of .Rmd is chapter name)
CeresBarros
committed
Merge branch 'addManualRmd' into development
CeresBarros
committed
append module name to .bib file for bookdown
CeresBarros
committed
fix tab:labels
CeresBarros
committed
re-knit
CeresBarros
committed
append module name to .bib file for bookdown
CeresBarros
committed
fix tab:labels
CeresBarros
committed
re-knit
CeresBarros
committed
re-knit
CeresBarros
committed
Merge branch 'addManualRmd' into development
CeresBarros
committed
rm authors from YML header
CeresBarros
committed
module chunk label with "-"
CeresBarros
committed
re-knit
CeresBarros
committed
Merge branch 'addManualRmd' into development
CeresBarros
committed
LaTeX bug fixes
CeresBarros
committed

Commits on Feb 26, 2022

gitignore *.csl
CeresBarros
committed
re-knit
CeresBarros
committed
fix moduleName ref text
CeresBarros
committed
Merge branch 'addManualRmd' into development
CeresBarros
committed

Commits on Mar 1, 2022

minor fixes to metadata
CeresBarros
committed
minor changes to .Rmd
CeresBarros
committed
Merge branch 'addManualRmd' into development
CeresBarros
committed

Commits on Mar 13, 2022

Merge remote-tracking branch 'upstream/development' into development
CeresBarros
committed
pass P(sim)$cohortDefinitionCols to all updateCohortData calls
CeresBarros
committed
Merge remote-tracking branch 'origin/development' into development
CeresBarros
committed

Commits on Mar 18, 2022

bugfix for latex: download badge images
CeresBarros
committed
bugfix for latex: normalizePath for figures
CeresBarros
committed
gitignore html folders and badge figures
CeresBarros
committed
Merge branch 'addManualRmd' into development
CeresBarros
committed
Merge remote-tracking branch 'CeresBarros/development' into development
CeresBarros
committed

Commits on Mar 19, 2022

metadatafixes
CeresBarros
committed
run example improvements
CeresBarros
committed

Commits on Mar 24, 2022

changes to B_core example run (pkg installation)
CeresBarros
committed
Merge branch 'addManualRmd' into development
CeresBarros
committed

Commits on Mar 29, 2022

minor improvement to example setup
CeresBarros
committed
spell out LBSE in header
CeresBarros
committed
Merge branch 'addManualRmd' into development
CeresBarros
committed
Merge branch 'development' into initialBglobal
CeresBarros
committed
rm dot from P(sim)$initialB & check value across modules
CeresBarros
committed

Commits on Apr 6, 2022

knitr cache is only logical now
CeresBarros
committed

Commits on Apr 7, 2022

change pipe table to list
CeresBarros
committed
fixes for latex
CeresBarros
committed
Merge branch 'addManualRmd' into initialBglobal
CeresBarros
committed
need LandR@LANDISinitialB to pass initialB = NA/NULL
CeresBarros
committed

Commits on Apr 12, 2022

Merge remote-tracking branch 'upstream/development' into development
CeresBarros
committed
bump LandR version
CeresBarros
committed
Merge branch 'development' into initialBglobal
CeresBarros
committed
bump LandR version
CeresBarros
committed
bump LandR
CeresBarros
committed

Commits on Apr 14, 2022

merge branch from usptream
CeresBarros
committed

Commits on Apr 21, 2022

Merge remote-tracking branch 'upstream/development' into initialBglobal
CeresBarros
committed

Commits on Jun 21, 2022