Fix/view species #42

cen-cgeier · 2023-11-28T09:37:08Z

Optimisation des vues pr_zh.invertebrates, pr_zh.vertebrates et pr_zh.flora

Ajout d'index sur les colonnes geom des différentes tables du schéma pr_zh
Regroupement de with synthese_taxa as et synthese_zh as
Jointure INNER de gn_synthese.synthese et pr_zh.t_zh sur les géométries intersectées
Jointure LEFT de utilisateurs.v_userslist_forall_applications et gn_synthese.synthese pour la récupération des organismes

la fixation du .gitignore sur le fichier module.config.ts n'a pas abouti

Dev > Main / 1.1.0

Dev > Main / 1.1.1

Develop > Master / 1.2.0

Fix/view species

cen-cgeier · 2023-11-28T09:56:03Z

Le paramètre limit=-1 pause toujours problème.

Log :

[bf97817e-2f57-4e9b-9527-90fe5ab0452e] Exception on /zones_humides/331/taxa [GET]
Traceback (most recent call last):
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1276, in _execute_context
    self.dialect.do_execute(
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 608, in do_execute
    cursor.execute(statement, parameters)
psycopg2.errors.InvalidRowCountInLimitClause: ERREUR:  LIMIT ne doit pas être négative


The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/flask/app.py", line 1823, in full_dispatch_request
    rv = self.dispatch_request()
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/flask/app.py", line 1799, in dispatch_request
    return self.ensure_sync(self.view_functions[rule.endpoint])(**view_args)
  File "/home/geonatureadmin/geonature/backend/geonature/core/gn_permissions/decorators.py", line 62, in decorated_view
    return view_func(*args, **kwargs)
  File "/home/geonatureadmin/gn_module_ZH/backend/gn_module_zh/blueprint.py", line 822, in write_csv
    results = query.return_query().get("items", [])
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/utils_flask_sqla/generic.py", line 284, in return_query
    data, nb_result_without_filter, nb_results = self.query()
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/utils_flask_sqla/generic.py", line 273, in query
    data = self.set_limit(q).all()
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 3373, in all
    return list(self)
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 3535, in __iter__
    return self._execute_and_instances(context)
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 3560, in _execute_and_instances
    result = conn.execute(querycontext.statement, self._params)
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1011, in execute
    return meth(self, multiparams, params)
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/sql/elements.py", line 298, in _execute_on_connection
    return connection._execute_clauseelement(self, multiparams, params)
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1124, in _execute_clauseelement
    ret = self._execute_context(
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1316, in _execute_context
    self._handle_dbapi_exception(
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1510, in _handle_dbapi_exception
    util.raise_(
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/util/compat.py", line 182, in raise_
    raise exception
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1276, in _execute_context
    self.dialect.do_execute(
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 608, in do_execute
    cursor.execute(statement, parameters)
sqlalchemy.exc.DataError: (psycopg2.errors.InvalidRowCountInLimitClause) ERREUR:  LIMIT ne doit pas être négative

[SQL: SELECT pr_zh.vertebrates.id_zh AS pr_zh_vertebrates_id_zh, pr_zh.vertebrates.cd_nom AS pr_zh_vertebrates_cd_nom, pr_zh.vertebrates.group_class AS pr_zh_vertebrates_group_class, pr_zh.vertebrates.group_order AS pr_zh_vertebrates_group_order, pr_zh.vertebrates.scientific_name AS pr_zh_vertebrates_scientific_name, pr_zh.vertebrates.vernac_name AS pr_zh_vertebrates_vernac_name, pr_zh.vertebrates.statut_type AS pr_zh_vertebrates_statut_type, pr_zh.vertebrates.statut AS pr_zh_vertebrates_statut, pr_zh.vertebrates.article AS pr_zh_vertebrates_article, pr_zh.vertebrates.doc_url AS pr_zh_vertebrates_doc_url, pr_zh.vertebrates.last_date AS pr_zh_vertebrates_last_date, pr_zh.vertebrates.observer AS pr_zh_vertebrates_observer, pr_zh.vertebrates.organisme AS pr_zh_vertebrates_organisme, pr_zh.vertebrates.obs_nb AS pr_zh_vertebrates_obs_nb 
FROM pr_zh.vertebrates 
WHERE pr_zh.vertebrates.id_zh = %(id_zh_1)s ORDER BY pr_zh.vertebrates.id_zh 
 LIMIT %(param_1)s OFFSET %(param_2)s]
[parameters: {'id_zh_1': 331, 'param_1': -1, 'param_2': 0}]
(Background on this error at: http://sqlalche.me/e/13/9h9h)
[2023-11-28 10:42:55 +0100] [432726] [ERROR] Exception on /zones_humides/331/taxa [GET]
Traceback (most recent call last):
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1276, in _execute_context
    self.dialect.do_execute(
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 608, in do_execute
    cursor.execute(statement, parameters)
psycopg2.errors.InvalidRowCountInLimitClause: ERREUR:  LIMIT ne doit pas être négative


The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/flask/app.py", line 1823, in full_dispatch_request
    rv = self.dispatch_request()
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/flask/app.py", line 1799, in dispatch_request
    return self.ensure_sync(self.view_functions[rule.endpoint])(**view_args)
  File "/home/geonatureadmin/geonature/backend/geonature/core/gn_permissions/decorators.py", line 62, in decorated_view
    return view_func(*args, **kwargs)
  File "/home/geonatureadmin/gn_module_ZH/backend/gn_module_zh/blueprint.py", line 822, in write_csv
    results = query.return_query().get("items", [])
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/utils_flask_sqla/generic.py", line 284, in return_query
    data, nb_result_without_filter, nb_results = self.query()
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/utils_flask_sqla/generic.py", line 273, in query
    data = self.set_limit(q).all()
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 3373, in all
    return list(self)
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 3535, in __iter__
    return self._execute_and_instances(context)
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 3560, in _execute_and_instances
    result = conn.execute(querycontext.statement, self._params)
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1011, in execute
    return meth(self, multiparams, params)
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/sql/elements.py", line 298, in _execute_on_connection
    return connection._execute_clauseelement(self, multiparams, params)
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1124, in _execute_clauseelement
    ret = self._execute_context(
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1316, in _execute_context
    self._handle_dbapi_exception(
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1510, in _handle_dbapi_exception
    util.raise_(
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/util/compat.py", line 182, in raise_
    raise exception
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1276, in _execute_context
    self.dialect.do_execute(
  File "/home/geonatureadmin/geonature/backend/venv/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 608, in do_execute
    cursor.execute(statement, parameters)
sqlalchemy.exc.DataError: (psycopg2.errors.InvalidRowCountInLimitClause) ERREUR:  LIMIT ne doit pas être négative

[SQL: SELECT pr_zh.vertebrates.id_zh AS pr_zh_vertebrates_id_zh, pr_zh.vertebrates.cd_nom AS pr_zh_vertebrates_cd_nom, pr_zh.vertebrates.group_class AS pr_zh_vertebrates_group_class, pr_zh.vertebrates.group_order AS pr_zh_vertebrates_group_order, pr_zh.vertebrates.scientific_name AS pr_zh_vertebrates_scientific_name, pr_zh.vertebrates.vernac_name AS pr_zh_vertebrates_vernac_name, pr_zh.vertebrates.statut_type AS pr_zh_vertebrates_statut_type, pr_zh.vertebrates.statut AS pr_zh_vertebrates_statut, pr_zh.vertebrates.article AS pr_zh_vertebrates_article, pr_zh.vertebrates.doc_url AS pr_zh_vertebrates_doc_url, pr_zh.vertebrates.last_date AS pr_zh_vertebrates_last_date, pr_zh.vertebrates.observer AS pr_zh_vertebrates_observer, pr_zh.vertebrates.organisme AS pr_zh_vertebrates_organisme, pr_zh.vertebrates.obs_nb AS pr_zh_vertebrates_obs_nb 
FROM pr_zh.vertebrates 
WHERE pr_zh.vertebrates.id_zh = %(id_zh_1)s ORDER BY pr_zh.vertebrates.id_zh 
 LIMIT %(param_1)s OFFSET %(param_2)s]
[parameters: {'id_zh_1': 331, 'param_1': -1, 'param_2': 0}]
(Background on this error at: http://sqlalche.me/e/13/9h9h)

camillemonchicourt and others added 16 commits June 2, 2023 17:27

Merge pull request PnX-SI#23 from PnX-SI/dev

1377dbc

Dev > Main / 1.1.0

Merge pull request PnX-SI#26 from PnX-SI/dev

479decc

Dev > Main / 1.1.1

Merge pull request PnX-SI#39 from PnX-SI/develop

6baf6d5

Develop > Master / 1.2.0

fix gitiginore module.config.ts

2941928

fix gitiginore module.config.ts

244cbc9

accelerate views species

8c34476

add index geom

8805eab

fix lint

7e32d93

fix lint

94a287a

fix lint

532bf05

fix lint

9716025

fix lint

6ec9cc3

fix join v_userslist_forall_applications

2fa8967

re-order revision

4af5781

fix LEFT join v_userslist_forall_applications

d609877

Merge pull request #1 from cen-cgeier/fix/view_species

bbcbace

Fix/view species

cen-cgeier mentioned this pull request Nov 28, 2023

total_filtered non cohérente PnX-SI/Utils-Flask-SQLAlchemy#40

Closed

JulienCorny mentioned this pull request Apr 12, 2024

[GeoNature 2.14] error 500 'générer la liste des espèces' #61

Merged

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Fix/view species #42

Fix/view species #42

cen-cgeier commented Nov 28, 2023

cen-cgeier commented Nov 28, 2023

Fix/view species #42

Are you sure you want to change the base?

Fix/view species #42

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cen-cgeier commented Nov 28, 2023

cen-cgeier commented Nov 28, 2023