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1.0.2
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@d-cameron d-cameron released this 23 Dec 03:04
· 1298 commits to master since this release
v1.0.2
efa0487
  • Multi-mapping reads now only contribute to assemblies at the location with the best assembly
    • This prevents double-scoring of reads that could contribute to assemblies at multiple mapping locations
  • Multi-mapping read handling is now auto-detected based on the presence of a non-split secondary alignment.
    • Improves performance of BAM files that do not contain multi-mapping reads
  • Assembly anchors no longer overrun contig bounds
  • Hard clipped reads are now supported
    • Hard to soft clip conversion will still be attempted when extracting SV reads
  • Recovery will be attempted after an error during assembly
  • Completed assembly tasks will not be recomputed when killed and restarted

Be sure to check out the README file and the updated examples for the new command line syntax introduced in version 1.0.0

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