+OSCAR files modified by PDC - Dockerfile, 3rdNext

oscar/Dockerfile

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+# Dockerfile for the PDC's Customized OSCAR 12 E2E exporter service
+#
+#
+# Modified OSCAR 12 build. Import SQL, filter and export to aggregate data-gathering endpoint.
+# Steps from https://github.com/scoophealth/SCOOP-doc/wiki/OSCAR-Setup-Guide.
+#
+# Example:
+# sudo docker pull pdcbc/oscar_e2e
+# sudo docker run -d --name=oscar -h oscar --restart=always \
+#   --link gateway:gateway \
+#   -v /encrypted/docker/import/:/e2e/:ro \
+#   pdcbc/oscar
+#
+# Linked containers
+# - Gateway:    --link gateway:gateway
+#
+# Folder paths
+# - SQL import: -v </path/>:/e2e/:ro
+#
+#
+FROM phusion/baseimage
+MAINTAINER [email protected]
+
+
+# Update system, add repo and install packages
+#
+ENV DEBIAN_FRONTEND noninteractive
+RUN echo 'deb http://ppa.launchpad.net/webupd8team/java/ubuntu trusty main' \
+      >> /etc/apt/sources.list.d/webupd8team-java-trusty.list; \
+    apt-key adv --keyserver keyserver.ubuntu.com --recv-keys EEA14886; \
+    echo oracle-java6-installer shared/accepted-oracle-license-v1-1 \
+      select true | /usr/bin/debconf-set-selections
+RUN apt-get update; \
+    apt-get install --no-install-recommends -y \
+      libmysql-java \
+      mysql-server \
+      oracle-java6-installer \
+      tomcat6; \
+    apt-get autoclean; \
+    apt-get clean; \
+    rm -rf \
+      /var/lib/apt/lists/* \
+      /tmp/* \
+      /var/tmp/* \
+      /usr/share/doc/ \
+      /usr/share/doc-base/ \
+      /usr/share/man/
+
+
+# Configure Tomcat6
+#
+ENV JAVA_HOME="/usr/lib/jvm/java-6-oracle"
+ENV CATALINA_HOME="/usr/share/tomcat6"
+ENV CATALINA_BASE="/var/lib/tomcat6"
+#
+RUN mkdir -p \
+      ${CATALINA_HOME}/server/classes/ \
+      ${CATALINA_HOME}/shared/classes/
+
+
+# OSCAR 12 WebARchive (.war) and properties
+#
+WORKDIR ${CATALINA_BASE}/webapps/
+COPY ./war/oscar12.war.* ./
+RUN cat oscar12.war.* > oscar12.war; \
+    rm oscar12.war.*
+COPY src/main/resources/oscar_mcmaster.properties /usr/share/tomcat6/oscar12.properties
+RUN sed -i \
+      -e "s/^#*db_username *=.*/db_username = root/" \
+      -e "s/^#*db_password *=.*/db_password=superInsecure/" \
+      -e "s/^#*db_name *=.*/db_name = oscar_12_1\?zeroDateTimeBehavior=round&useOldAliasMetadataBehavior=true&jdbcCompliantTruncation=false/" \
+      -e "s/^#*E2E_URL *=.*/E2E_URL = http:\/\/gateway:3001\/records\/create/" \
+      -e "s/^#*program *=.*/program = off/" \
+      -e "s/^#*ModuleNames *= *E2E/ModuleNames = E2E/" \
+      -e "s/^#*CASEMANAGEMENT *=.*/CASEMANAGEMENT = all/" \
+    /usr/share/tomcat6/oscar12.properties
+
+
+# Start MySQL and create database
+#
+WORKDIR /app/
+COPY ./database/mysql/ .
+RUN service mysql start; \
+    mysqladmin -u root password superInsecure; \
+    ./createdatabase_bc.sh root superInsecure oscar_12_1; \
+    rm -rf \
+      /var/lib/apt/lists/* \
+      /tmp/* \
+      /var/tmp/* \
+      /app/
+
+
+# Cron and script for SQL/E2E import/export
+#
+WORKDIR /
+RUN SCRIPT=/run_export.sh; \
+	  ( \
+	    echo "# Run SQL/E2E import/export (boot, daily 3:30 AM PDT = 10:30 AM UTC)"; \
+			echo "@reboot ${SCRIPT} > /import.log"; \
+	    echo "30 10 * * * ${SCRIPT}"; \
+	  ) \
+	    | crontab -; \
+    ( \
+      echo "#!/bin/bash"; \
+      echo ""; \
+      echo ""; \
+      echo "# Set variables"; \
+      echo "#"; \
+      echo "E2E_DIFF=\${E2E_DIFF:-off}"; \
+      echo "E2E_DIFF_DAYS=\${E2E_DIFF_DAYS:-14}"; \
+      echo ""; \
+      echo ""; \
+      echo "# Configure oscar12.properties"; \
+      echo "#"; \
+      echo 'sed -i \'; \
+      echo '  -e "s/^#*E2E_DIFF *=.*/E2E_DIFF = ${E2E_DIFF}/" \'; \
+      echo '  -e "s/^#*E2E_DIFF_DAYS *=.*/E2E_DIFF_DAYS = ${E2E_DIFF_DAYS}/" \'; \
+      echo "/usr/share/tomcat6/oscar12.properties"; \
+      echo ""; \
+      echo ""; \
+      echo "# Start MySQL and import dumps"; \
+      echo "#"; \
+      echo "service mysql start"; \
+      echo 'find /e2e/ -name "*.sql" | \'; \
+      echo "  while read IN"; \
+      echo "  do"; \
+      echo '    mysql --user=root --password=superInsecure oscar_12_1 < "${IN}"'; \
+      echo "  done"; \
+      echo ""; \
+      echo ""; \
+      echo "# Start Tomcat6"; \
+      echo "#"; \
+      echo "mkdir -p /tmp/tomcat6-tmp/"; \
+      echo "/sbin/setuser tomcat6 /usr/lib/jvm/java-6-oracle/bin/java \\"; \
+      echo "  -Djava.util.logging.config.file=/var/lib/tomcat6/conf/logging.properties \\"; \
+      echo "  -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager \\"; \
+      echo "  -Djava.awt.headless=true -Xmx1024m -Xms1024m -XX:MaxPermSize=512m -server \\"; \
+      echo "  -Djava.endorsed.dirs=/usr/share/tomcat6/endorsed -classpath /usr/share/tomcat6/bin/bootstrap.jar \\"; \
+      echo "  -Dcatalina.base=/var/lib/tomcat6 -Dcatalina.home=/usr/share/tomcat6 \\"; \
+      echo "  -Djava.io.tmpdir=/tmp/tomcat6-tmp org.apache.catalina.startup.Bootstrap start"; \
+    )  \
+    >> ${SCRIPT}; \
+    chmod +x ${SCRIPT}
+
+
+# Volume
+#
+VOLUME /e2e/

oscar/plugins/3rdNext/3rdNext.sh

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+#!/bin/bash
+#
+# Exit on errors or unitialized variables
+#
+set -e -o nounset
+
+
+# Save script directory and change to it
+#
+DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+cd ${DIR}
+
+
+# Replace any class files
+#
+if([ -f ReportDate.class ]||[ -f ThirdNextAppointment.class ])
+then
+	rm *.class
+fi
+#
+javac ReportDate.java
+javac ThirdNextAppointment.java
+
+
+# Run ThirdNextAppointment.java, classpath to connector
+#
+mkdir -p reports/
+java -cp ".:mysql-connector-java-3.0.11.jar" ThirdNextAppointment
+
+
+# Move output to data/sync directory
+#
+mkdir -p ../../../sync/
+mv reports/* ../../../sync/

oscar/plugins/3rdNext/README.md

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+# endpoint_3rdNext
+3rd next available appointment scripting and exporting

oscar/plugins/3rdNext/ReportDate.java

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+/*
+ * Determines date for specific weekday, example Tuesday, on preceeding weeks
+ * back to a specified earliest date.
+ * @author rrusk
+ */
+//package thirdnextappointment;
+
+import java.io.File;
+//import java.io.IOException;
+import java.text.ParseException;
+import java.text.SimpleDateFormat;
+import java.util.ArrayList;
+import java.util.Calendar;
+import java.util.Date;
+import java.util.GregorianCalendar;
+import java.util.logging.Level;
+import java.util.logging.Logger;
+
+/**
+ *
+ * @author rrusk
+ */
+public class ReportDate {
+
+    static final ClassLoader loader = ReportDate.class.getClassLoader();
+
+    public ClassLoader getLoader() {
+        return loader;
+    }
+
+    static private int setWeekDay(String weekDay) {
+        String matchDay = weekDay.toUpperCase();
+        int result;
+        if (matchDay.startsWith("MON")) {
+            result = Calendar.MONDAY;
+        } else if (matchDay.startsWith("TUE")) {
+            result = Calendar.TUESDAY;
+        } else if (matchDay.startsWith("WED")) {
+            result = Calendar.WEDNESDAY;
+        } else if (matchDay.startsWith("THU")) {
+            result = Calendar.THURSDAY;
+        } else if (matchDay.startsWith("FRI")) {
+            result = Calendar.FRIDAY;
+        } else if (matchDay.startsWith("SAT")) {
+            result = Calendar.SATURDAY;
+        } else { // must be Sunday
+            result = Calendar.SUNDAY;
+        }
+        return result;
+    }
+
+ /**
+  * 
+  * @param earliestDate in format "yyyy-MM-dd"
+  * @param weekDay with String value, for example "TUESDAY".
+  * @return array of strings containing dates of specified weekday
+  */
+    static public ArrayList<String> getDates(String earliestDate, String weekDay) {
+        ArrayList<String> weekdayArrayList = new ArrayList<String>();
+
+        SimpleDateFormat dateFormat = new SimpleDateFormat("yyyy-MM-dd");
+        Date earliestReportDate;
+        try {
+            earliestReportDate = dateFormat.parse(earliestDate);
+        } catch (ParseException ex) {
+            Logger.getLogger(ReportDate.class.getName()).log(Level.SEVERE, null, ex);
+            return weekdayArrayList;
+        }
+        Calendar cal = Calendar.getInstance();
+        cal.setTime(earliestReportDate);
+
+        Calendar calendar = Calendar.getInstance();
+        int day = calendar.get(Calendar.DAY_OF_WEEK);
+
+        Date reportDate = calendar.getTime();
+
+        int cutoffYear = cal.get(Calendar.YEAR);
+        int cutoffMonth = cal.get(Calendar.MONTH);
+        int cutoffDayOfMonth = cal.get(Calendar.DAY_OF_MONTH);
+        GregorianCalendar gCal =
+                new GregorianCalendar(cutoffYear, cutoffMonth, cutoffDayOfMonth);
+        Date cutoffDate = gCal.getTime();
+
+        int theWeekday = setWeekDay(weekDay);
+
+        boolean includeToday = true;
+        while (day != theWeekday) {
+            includeToday = false;
+            calendar.add(Calendar.DATE, 1);
+            day = calendar.get(Calendar.DAY_OF_WEEK);
+        }
+
+        if (includeToday) {
+            int year = calendar.get(Calendar.YEAR);
+            int month = calendar.get(Calendar.MONTH);
+            int dayOfMonth = calendar.get(Calendar.DAY_OF_MONTH);
+            reportDate = new GregorianCalendar(year, month, dayOfMonth).getTime();
+            weekdayArrayList.add(dateFormat.format(reportDate));
+        }
+
+        while (reportDate.after(cutoffDate)) {
+            calendar.add(Calendar.DATE, -7);
+            int year = calendar.get(Calendar.YEAR);
+            int month = calendar.get(Calendar.MONTH);
+            int dayOfMonth = calendar.get(Calendar.DAY_OF_MONTH);
+            reportDate = new GregorianCalendar(year, month, dayOfMonth).getTime();
+            if (reportDate.after(cutoffDate)  || reportDate.equals(cutoffDate)) {
+                weekdayArrayList.add(dateFormat.format(reportDate));
+            }
+        };
+        return weekdayArrayList;
+    }
+
+    public static void main(String[] args) {
+
+/*        File fd = new File("."); // current directory
+        File[] files = fd.listFiles();
+        for (File file : files) {
+            if (file.isDirectory()) {
+                System.out.print("directory:");
+            } else {
+                System.out.print("     file:");
+            }
+            try {
+                System.out.println(file.getCanonicalPath());
+            } catch (IOException ex) {
+                Logger.getLogger(ReportDate.class.getName()).log(Level.SEVERE, null, ex);
+            }
+        }
+*/
+        ReportDate rd = new ReportDate();
+        ArrayList<String> tuesdays = rd.getDates("2014-04-01", "TUESDAY");
+
+        String filepath = null;
+        for (int i = 0; i < tuesdays.size(); i++) {
+            filepath = "./reports/thirdnextappt_" + tuesdays.get(i) + ".txt";
+
+            File f = new File(filepath);
+            if (!f.exists()) {
+                System.out.println("file '" + filepath + "' doesn't exist");
+            }
+        }
+    }
+}