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PDBe EMBL-EBI

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  1. arpeggio arpeggio Public

    Calculation of interatomic interactions in molecular structures

    Python 81 20

  2. ccdutils ccdutils Public

    A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit

    Python 49 7

  3. pdbe-api-training pdbe-api-training Public

    Interactive Python notebooks for PDBe API training

    Jupyter Notebook 46 18

  4. pdb-images pdb-images Public

    Generates images from mmCIF/BCIF files

    TypeScript 38 4

  5. pdbecif pdbecif Public

    A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"

    Python 35 4

  6. PDBe_Programming PDBe_Programming Public

    PDBe Programming Interfaces information

    Jupyter Notebook 14 5

Repositories

Showing 10 of 38 repositories
  • pdbe-api-training Public

    Interactive Python notebooks for PDBe API training

    PDBeurope/pdbe-api-training’s past year of commit activity
    Jupyter Notebook 46 18 0 2 Updated Dec 24, 2024
  • ccdutils Public

    A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit

    PDBeurope/ccdutils’s past year of commit activity
    Python 49 Apache-2.0 7 1 1 Updated Dec 24, 2024
  • heatmap-component Public

    Canvas-based Interactive Heatmap Component

    PDBeurope/heatmap-component’s past year of commit activity
    TypeScript 2 Apache-2.0 0 0 0 Updated Dec 19, 2024
  • Investigations Public

    This application is designed to create mmcif files from facilities data.

    PDBeurope/Investigations’s past year of commit activity
    Python 0 0 0 0 Updated Dec 13, 2024
  • protein-cluster-conformers Public

    Clusters protein chains based on CA distance difference

    PDBeurope/protein-cluster-conformers’s past year of commit activity
    Python 10 0 0 1 Updated Dec 5, 2024
  • PDBeurope/pdbe-notebooks’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Nov 5, 2024
  • rellig Public
    PDBeurope/rellig’s past year of commit activity
    Python 4 Apache-2.0 0 0 0 Updated Oct 31, 2024
  • pdb-images Public

    Generates images from mmCIF/BCIF files

    PDBeurope/pdb-images’s past year of commit activity
    TypeScript 38 Apache-2.0 4 0 0 Updated Oct 17, 2024
  • protvista-pdb Public

    PDB ProtVista Viewer

    PDBeurope/protvista-pdb’s past year of commit activity
    JavaScript 10 Apache-2.0 8 0 1 Updated Sep 19, 2024
  • arpeggio Public

    Calculation of interatomic interactions in molecular structures

    PDBeurope/arpeggio’s past year of commit activity
    Python 81 GPL-3.0 20 9 6 Updated Sep 3, 2024

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