Remove the Simulation dependency on linux by making it a package

[jr1221]

Changes

• Moves the simulate binary to calypso-simulate package in the root directory
• Moves the protobuf files to ./src/proto/ to clarify what they are to the lib.rs
• Fix CI to pickup calypso-simulate
• Fix Dockerfile to pickup calypso-simulate

Notes

I am unsure about whether the build.rs is being properly run when calypso-simulate is built. Its possible it is skipping all of the verification done when normally building calypso. I figure that isnt a big deal however.

Test Cases

To Do

Checklist

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Closes #82

[jr1221]

ew this is the worst thing I have ever done