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Add Binary Segmentation type algorithms #5

Merged
merged 44 commits into from
Jan 1, 2024
Merged

Add Binary Segmentation type algorithms #5

merged 44 commits into from
Jan 1, 2024

Commits on Dec 29, 2023

  1. Add first version of seeded binary segmentation

    @Tveten
    Tveten committed Dec 29, 2023
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  2. Fix wrong weights in mean score

    @Tveten
    Tveten committed Dec 29, 2023
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  3. Remove artificial changepoint at last index

    @Tveten
    Tveten committed Dec 29, 2023
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  4. Remove artifical changepoint at end index in PELT

    @Tveten
    Tveten committed Dec 29, 2023
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  5. Align change detector format with anomaly detector

    @Tveten
    Tveten committed Dec 29, 2023
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  6. Update tests with new change detector output format

    @Tveten
    Tveten committed Dec 29, 2023
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  7. Add SeededBinarySegmentation to tests

    @Tveten
    Tveten committed Dec 29, 2023
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  8. Increase PELT default penalty by factor of 2 

    More robust. Failed basic test with scale = 1.
    @Tveten
    Tveten committed Dec 29, 2023
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  9. Add per sample score for SeededBinarySegmentation

    @Tveten
    Tveten committed Dec 29, 2023
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  10. Remove outdated comment

    @Tveten
    Tveten committed Dec 29, 2023
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  11. Add tests for all cange detector output format types

    @Tveten
    Tveten committed Dec 29, 2023
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  12. Update documentation

    @Tveten
    Tveten committed Dec 29, 2023
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  13. Use threshold_scale as argument rather than threshold 

    Easier to tune for different n and p.
    @Tveten
    Tveten committed Dec 29, 2023
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  14. Move scaling out of get_default_threshold

    @Tveten
    Tveten committed Dec 29, 2023
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  15. Use threshold_scale rather than threshold as input argument

    @Tveten
    Tveten committed Dec 29, 2023
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  16. Document that threshold tuning is not supported yet

    @Tveten
    Tveten committed Dec 29, 2023
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  17. Use 'penalty_scale' rather than 'penalty'

    @Tveten
    Tveten committed Dec 29, 2023
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  18. Add general input data validation function

    @Tveten
    Tveten committed Dec 29, 2023
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  19. Set 'fit_is_empty' tag to False

    @Tveten
    Tveten committed Dec 29, 2023
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  20. Add documentation

    @Tveten
    Tveten committed Dec 29, 2023
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  21. Add larger than and smaller than parameter checkes

    @Tveten
    Tveten committed Dec 29, 2023
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  22. Add checking function for a value being contained in an interval

    @Tveten
    Tveten committed Dec 29, 2023
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  23. Update all detectors to use validation utilities

    @Tveten
    Tveten committed Dec 29, 2023
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  24. Set default threshold_scale to 2.0

    @Tveten
    Tveten committed Dec 29, 2023
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  25. Add tests for parameter and data validators

    @Tveten
    Tveten committed Dec 29, 2023
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  26. Add more parameter tests

    @Tveten
    Tveten committed Dec 29, 2023
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Commits on Dec 30, 2023

  1. Replace min_interval_length with min_segment_length

    @Tveten
    Tveten committed Dec 30, 2023
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  2. Remove old comment

    @Tveten
    Tveten committed Dec 30, 2023
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  3. Add tuning option for SeededBinarySegmentation

    @Tveten
    Tveten committed Dec 30, 2023
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  4. Tidy up documentation

    @Tveten
    Tveten committed Dec 30, 2023
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  5. Rename binary_segmentation module to seeded_binseg 

    To separate the different binary segmentation modules
    @Tveten
    Tveten committed Dec 30, 2023
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  6. Rename exploratory script

    @Tveten
    Tveten committed Dec 30, 2023
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  7. Rename numba run function

    @Tveten
    Tveten committed Dec 30, 2023
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  8. Add support for both change and anomaly scores

    @Tveten
    Tveten committed Dec 30, 2023
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  9. Update arguments of anomaly output formatter

    @Tveten
    Tveten committed Dec 30, 2023
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  10. Fix bug in make_seeded_intervals

    @Tveten
    Tveten committed Dec 30, 2023
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  11. Turn on caching of mean_anomaly_score

    @Tveten
    Tveten committed Dec 30, 2023
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  12. Update mean_anomaly_score documentation

    @Tveten
    Tveten committed Dec 30, 2023
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Commits on Dec 31, 2023

  1. Add first version of circular binary segmentation

    @Tveten
    Tveten committed Dec 31, 2023
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Commits on Jan 1, 2024

  1. Make score output of anomaly detectors more customisable 

    What constitutes a suitable format for scores depend on the method
    @Tveten
    Tveten committed Jan 1, 2024
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  2. Add input index to scores output

    @Tveten
    Tveten committed Jan 1, 2024
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  3. Make score output type for change detectors more customisable

    @Tveten
    Tveten committed Jan 1, 2024
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  4. Update explorative script

    @Tveten
    Tveten committed Jan 1, 2024
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  5. Fix typo

    @Tveten
    Tveten committed Jan 1, 2024
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