Code

Full implementation of Casanovo-DB#352

Code

Merged

VarunAnanth2003 merged 23 commits intodev_db_searchNoble-Lab/casanovo:dev_db_searchfrom db_search_fullNoble-Lab/casanovo:db_search_fullCopy head branch name to clipboardSep 13, 2024

+1,804-973

Commits

Commits on Jul 2, 2024

• rough implementation

  VarunAnanth2003

  committed
  f25ace8

Commits on Jul 3, 2024

• tested implementation of db search

  VarunAnanth2003

  committed
  f7dfbc8

• fix for issue with 0 candidates

  VarunAnanth2003

  committed
  e2ce317

• minor fixes added

  VarunAnanth2003

  committed
  5ef27e0

• reordered and renamed variables for consistency

  VarunAnanth2003

  committed
  5f0675f

Commits on Jul 4, 2024

• casanovo-db full working version with code simplification

  VarunAnanth2003

  committed
  b4fd8ff

• Generate new screengrabs with rich-codex

  github-actions[bot]

  committed
  35ba7d4

Commits on Jul 8, 2024

• fix batching issues

  VarunAnanth2003

  committed
  f8a1a89

• Merge branch 'db_search_full' of https://github.com/Noble-Lab/casanovo into db_search_full

  VarunAnanth2003

  committed
  fe8794d

Commits on Aug 12, 2024

• small fixes regarding documentation, import syntax, etc.

  VarunAnanth2003

  committed
  7cb8e14

Commits on Aug 20, 2024

• add proteindatabase

  VarunAnanth2003

  committed
  b2f08ac

• Generate new screengrabs with rich-codex

  github-actions[bot]

  committed
  3d0b0b9

Commits on Aug 21, 2024

• finish proteindatabase

  VarunAnanth2003

  committed
  812226e

• Merge branch 'db_search_full' of https://github.com/Noble-Lab/casanovo into db_search_full

  VarunAnanth2003

  committed
  df68c1d

Commits on Aug 23, 2024

• all comments addressed

  VarunAnanth2003

  committed
  cfd39e8

Commits on Aug 28, 2024

• new comments addressed

  VarunAnanth2003

  committed
  106c4ec

Commits on Sep 3, 2024

• final adjustments added

  VarunAnanth2003

  committed
  0dfdb2c

• minor changes regarding formatting and small efficiency boosts

  VarunAnanth2003

  committed
  4a5b238

• changes before reformatting config

  VarunAnanth2003

  committed
  4352bbd

• replace all occurences of "max_length" with "max_peptide_len"

  VarunAnanth2003

  committed
  ddff67f

• added nonspecific digestion

  VarunAnanth2003

  committed
  a3548d0

Commits on Sep 13, 2024

• minor comments

  VarunAnanth2003

  committed
  e8d4682

• full branch comments addressed

  VarunAnanth2003

  committed
  68b6926