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Add a few more recent News posts for all subsites.
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title: 'GCC2022: Registration open for Webinar mode' | ||
tease: "For those that won't attend in person, the GCC Organizing Committee is happy to announce a virtual webinar-like option" | ||
date: "2022-06-27" | ||
author: beatrizserrano | ||
subsites: [global, eu, pasteur, freiburg, erasmusmc, elixir-it, belgium, genouest] | ||
--- | ||
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As you may know, the [Galaxy Community Conference (GCC2022)](/events/gcc2022/) will take place in Minnesota this year. For those that won't attend in person, the GCC Organizing Committee is happy to announce a **virtual webinar-like option**. | ||
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**How can you register?** | ||
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* There is a special *Virtual* option in the registration form for online only. | ||
* Once you are registered and a few days before the conference, you'll receive all the information you need, including: | ||
- an invitation to join the GCC2022 Slack space, | ||
- a link to a zoom webinar. | ||
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**Is it going to be interactive?** | ||
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There will be a [Meeting Owl](https://owllabs.com) on-site that will show you the room. In the webinar mode, you will have the chance to: | ||
* Watch the presentations live (remember the time difference!). | ||
* Ask questions. The chat and Q`&`A functionality will be enabled. There will be someone online in close contact with the moderator in the room. | ||
* If there's no time for more questions, you can always post them in the Slack channel. | ||
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**Will you be able to attend the poster session?** | ||
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Partially. The authors will deposit their posters in [Sched](https://gcc2022.sched.com/), and you'll have the chance to ask questions in Slack using the channel *gcc2022-posters-demo*. Their response may be slow, depending on how busy the poster presenters are in real life. | ||
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**How much will the virtual attendance cost?** | ||
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- Regular online registration: $80. | ||
- $10 for Low-Income-Countries (check [this list](https://drive.google.com/file/d/1PW11lByYd61cIT7wPnGmTQpd9kM79EXX/view?usp=sharing) to find out which countries qualify as such). | ||
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**When is the deadline for registration?** | ||
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- July 15. | ||
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Thank you all for all the interest that you've been showing to join GCC2022, regardless of the format. That's great to see! |
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title: 'New Paper "Creating a good learning and sharing environment for bioinformatics"' | ||
date: "2022-07-06" | ||
tease: "Tomas Klingström and J.I. Ohlsson have published a paper about the use of BioContainers, Galaxy, and the GTN for bioinformatics researchers." | ||
hide_tease: true | ||
tags: | ||
- paper | ||
- citations | ||
supporters: | ||
subsites: [global, eu, pasteur, freiburg, erasmusmc, elixir-it, belgium, genouest] | ||
main_subsite: eu | ||
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Tomas Klingström and J.I. Ohlsson have published a [paper](https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/39_007.pdf) about the use of BioContainers, Galaxy, and the GTN Training material for bioinformatics researchers. Congratulations to this nice publication and thanks for using the European Galaxy server and sharing your results with us! | ||
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Abstract: | ||
Most bioinformatics researchers create their own working environments depending on their | ||
training, access to computing resources and what advice they receive from other researchers. | ||
This makes the development of training programs difficult as much knowledge and work is | ||
locked into each researcher’s unique computing environment for data analysis. | ||
Using software container solutions such as Biocontainers and a ‘one image per task’ coding | ||
pattern when developing a workflow, it is easy for an application expert to rewrite workflows | ||
for research, training and dissemination of new workflows for analysing data. This paper | ||
describes the reasoning behind this approach which is now being tested in a collaboration | ||
between livestock researchers in Sweden and South Africa. |
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title: The European Galaxy Team is hiring! | ||
date: "2022-08-10" | ||
tease: "The Freiburg Galaxy Team is looking for a Systems Engineer/DevOps Engineer!" | ||
hide_tease: true | ||
location: Freiburg, Germany | ||
tags: [jobs] | ||
subsites: [global, eu, pasteur, freiburg, erasmusmc, elixir-it, belgium, genouest] | ||
main_subsite: eu | ||
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The **Freiburg Galaxy Team** is looking for a **Systems Engineer/DevOps Engineer**! | ||
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[![A Freiburg sunset](https://farm1.staticflickr.com/366/31768905991_508703bbeb_k.jpg){width=512}](https://www.flickr.com/photos/134305289@N03/31768905991/in/album-72157671198874931/){: data-flickr-embed="true" } | ||
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The **Freiburg Galaxy Team** is looking for a **Systems Engineer/DevOps Engineer** to support our work on the web-based computational platform Galaxy. The Freiburg Galaxy Team offers the service usegalaxy.eu to biomedical and pharmaceutical researchers in Europe. | ||
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The engineer will be responsible for implementing, supporting, and documenting several large-scale application systems. This role includes, but is not limited to, the installation, modification, testing, and upgrades of applications, operating systems, file systems, hardware, and cloud environments. The work will be carried out together with other administrators. | ||
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**Your opportunities** | ||
This position will offer the postholder the opportunity to interact with an interdisciplinary bioinformatics, life science and software development team, working with cutting edge cloud infrastructure across Europe and engaged in advanced topics such as distributed heterogeneous computing, encrypted data processing or smart scheduling of jobs across federated resources. | ||
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**Your Tasks** | ||
- Administrate with a team of admins the European Galaxy server and a european wide distributed compute network | ||
- Identify interdependence and productivity barriers between the development and operations functions; | ||
- Identify opportunities to automate operations activities and/or to reduce process complexity; | ||
- Design, implement, and maintain automation tool sets for configuration management, infrastructure and application deployment processes; | ||
- Work within the team to design and improve developed software and deployment pipelines; | ||
- Build internal and external contacts and participate in networks for the exchange of information and to form relationships for future collaborations; | ||
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**Your Profile** | ||
We are looking for a dedicated and motivated team player with strong communication skills and a good command of the English language. | ||
The successful applicant will be an expert Linux system administrator with a proficient knowledge of Python, Git and SQL databases.He/she is an analytical thinker, problem-solver and reliable, with a strong desire to learn and collaborate with the team. | ||
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Additional skills that are advantageous: | ||
- Bachelor or Master in Informatics or equal qualification | ||
- 5 years+ experience | ||
- Experience building containerized applications | ||
- Experience configuring continuous integration and continuous delivery (CI/CD) systems | ||
- Proficiency using configuration management tools (Terraform, Ansible) | ||
- Familiarity with cloud technologies (e.g. OpenStack) | ||
- Experience on high-performance computing environments | ||
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**What we offer** | ||
Located in a region that connects Germany, France and Switzerland, our institute offers an international research environment with outstanding infrastructure facilities and a positive working atmosphere that places a high value on work-life balance. | ||
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- Salary according to your qualification and professional experience according to the German TV-L salary grading system | ||
- A team of admins to work with | ||
- Professional training and development opportunities | ||
- Challenging tasks in European wide distributed projects in a modern working environment | ||
- Flexible working hours and trust-based working time | ||
- 30 days holiday a year | ||
- Reduced-cost public transport within the local area | ||
- Family-friendly offers (affiliated day care center at the institute, family service) | ||
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This [position](https://drive.google.com/file/d/13jGEmb8lH6XwO1p0CGMnXRAO0qE7Ptr8/view?usp=sharing) is open immediately and funded for two years, with the possibility of extension. More information about the European Galaxy project is available on https://galaxyproject.eu. | ||
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**Ready to join our team?** | ||
Please submit your complete application documents including a 1-page motivation summary, CV and contact details of referees by 22th August 2022 to | ||
[email protected] |