Ignore terms with 0 coefficients #10564
Workflow file for this run
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| on: | |
| workflow_dispatch: | |
| pull_request: | |
| merge_group: | |
| types: | |
| - checks_requested | |
| name: "Basic content checks" | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| links: | |
| runs-on: ubuntu-latest | |
| name: "Check links" | |
| permissions: | |
| contents: read | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Convert reStructuredText files to Markdown | |
| run: | | |
| pip install "rst-to-myst[sphinx]==0.4.0" | |
| find docs/sphinx/ -type f -name "*.rst" -print0 | xargs -0 rst2myst convert --raise-on-warning | |
| - name: Check links in Markdown files | |
| uses: gaurav-nelson/github-action-markdown-link-check@v1 | |
| with: | |
| use-verbose-mode: "yes" | |
| config-file: ".github/workflows/config/md_link_check_config.json" | |
| license_headers: | |
| name: Check license headers | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: apache/skywalking-eyes/[email protected] | |
| with: | |
| config: .licenserc.yaml | |
| token: '' # with the appropriate permission license eye can add comments on the PR | |
| filters: | |
| name: Filter files to check | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| outputs: | |
| json: ${{ steps.files.outputs.json }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: ${{ (github.event_name == 'pull_request' && '0') || '1' }} | |
| - id: files | |
| run: | | |
| if ${{ github.event_name == 'pull_request' }}; then | |
| diff_base=${{ github.event.pull_request.base.sha }} | |
| git rev-list HEAD..$diff_base # fails the step if something went wrong | |
| list_files="git diff --diff-filter=d --name-only $diff_base --" | |
| echo "## Changed Files" >> $GITHUB_STEP_SUMMARY | |
| echo "The following files contain changes:" >> $GITHUB_STEP_SUMMARY | |
| for file in `$list_files`; do | |
| echo "$file" >> $GITHUB_STEP_SUMMARY | |
| done | |
| else | |
| list_files="git ls-files" | |
| fi | |
| json="{\"files\":{}, \"patterns\":{}}" | |
| function create_output { | |
| json=`echo $json | jq ".patterns |= . + {"$1":[]}"` | |
| for pattern in $2; do | |
| pattern=\'$pattern\' | |
| json=`echo $json | jq ".patterns.$1 |= . + [\"$pattern\"]"` | |
| done | |
| json=`echo $json | jq ".files |= . + {"$1":[]}"` | |
| for file in `echo $2 | xargs $list_files`; do | |
| file=\'$file\' | |
| json=`echo $json | jq ".files.$1 |= . + [\"$file\"]"` | |
| done | |
| } | |
| create_output cxx '*.cpp *.h *.hpp :!:test :!:targettests :!:tpls :!:**/nlopt-src/*' | |
| create_output cxx_headers '*.h *.hpp :!:test :!:targettests :!:tpls :!:**/nlopt-src/*' | |
| create_output cxx_examples 'docs/sphinx/examples/**/*.cpp' 'docs/sphinx/applications/cpp/*.cpp' 'docs/sphinx/targets/cpp/*.cpp' | |
| create_output python '*.py :!:python/tests :!:test :!:targettests :!:tpls :!:docs/sphinx/conf.py' | |
| create_output markdown '*.md :!:tpls' | |
| create_output rst '*.rst :!:tpls :!:docs/sphinx/_templates/**/*.rst' | |
| echo "json=$(echo $json)" >> $GITHUB_OUTPUT | |
| formatting: | |
| name: Check code formatting | |
| runs-on: ubuntu-latest | |
| needs: filters | |
| permissions: | |
| contents: read | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: C++ | |
| run: | | |
| echo "## C++ Formatting" >> $GITHUB_STEP_SUMMARY | |
| files=(${{ join(fromJSON(needs.filters.outputs.json).files.cxx, ' ') }}) | |
| if [ "${#files[@]}" -gt "0" ]; then | |
| wget -qO- https://apt.llvm.org/llvm-snapshot.gpg.key | sudo tee /etc/apt/trusted.gpg.d/apt.llvm.org.asc | |
| sudo add-apt-repository "deb http://apt.llvm.org/jammy/ llvm-toolchain-jammy-16 main" | |
| sudo apt-get update && sudo apt-get install -y --no-install-recommends clang-format-16 | |
| echo ${files[@]} | xargs clang-format-16 -i | |
| echo ${{ join(fromJSON(needs.filters.outputs.json).patterns.cxx, ' ') }} \ | |
| | xargs git diff --diff-filter=d -- > /tmp/clang-format.patch | |
| else | |
| echo "No files to check." >> $GITHUB_STEP_SUMMARY | |
| exit 0 | |
| fi | |
| if [ -s /tmp/clang-format.patch ]; then | |
| echo "The following formatting changes need to be applied:" >> $GITHUB_STEP_SUMMARY | |
| echo '```text' >> $GITHUB_STEP_SUMMARY | |
| cat /tmp/clang-format.patch >> $GITHUB_STEP_SUMMARY | |
| echo '```' >> $GITHUB_STEP_SUMMARY | |
| exit 1 | |
| else | |
| echo "Totally checked ${#files[@]} files. All files are formatted as expected." >> $GITHUB_STEP_SUMMARY | |
| fi | |
| - name: Python | |
| run: | | |
| echo "## Python Formatting" >> $GITHUB_STEP_SUMMARY | |
| files=(${{ join(fromJSON(needs.filters.outputs.json).files.python, ' ') }}) | |
| if [ "${#files[@]}" -gt "0" ]; then | |
| pip install yapf | |
| echo ${files[@]} | xargs yapf --style google --recursive -i | |
| echo ${{ join(fromJSON(needs.filters.outputs.json).patterns.python, ' ') }} \ | |
| | xargs git diff --diff-filter=d -- > /tmp/yapf.patch | |
| else | |
| echo "No files to check." >> $GITHUB_STEP_SUMMARY | |
| exit 0 | |
| fi | |
| if [ -s /tmp/yapf.patch ]; then | |
| echo "The following formatting changes need to be applied:" >> $GITHUB_STEP_SUMMARY | |
| echo '```text' >> $GITHUB_STEP_SUMMARY | |
| cat /tmp/yapf.patch >> $GITHUB_STEP_SUMMARY | |
| echo '```' >> $GITHUB_STEP_SUMMARY | |
| exit 1 | |
| else | |
| echo "Totally checked ${#files[@]} files. All files are formatted as expected." >> $GITHUB_STEP_SUMMARY | |
| fi | |
| - name: Markdown | |
| uses: nosborn/[email protected] | |
| with: | |
| files: . | |
| config_file: '.github/workflows/config/md_lint_config.yml' | |
| spelling: | |
| name: Check spelling | |
| runs-on: ubuntu-latest | |
| needs: filters | |
| permissions: | |
| contents: read | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Check spelling allowlist | |
| run: | | |
| for file in `ls .github/workflows/config/spelling_allowlist*.txt`; do | |
| sorted_allowlist=`cat $file | sort` | |
| if [ "$sorted_allowlist" != "$(cat $file)" ]; then | |
| echo "Expecting spelling allowlist in $file to be sorted." | |
| exit 1 | |
| fi | |
| done | |
| - name: "Markdown files" | |
| uses: rojopolis/[email protected] | |
| with: | |
| config_path: '.github/workflows/config/spellcheck_config.yml' | |
| output_file: markdown_spellcheck.txt | |
| task_name: markdown | |
| source_files: ${{ join(fromJSON(needs.filters.outputs.json).files.markdown, ' ') || '*.nonexistent' }} | |
| - name: "reStructuredText files" | |
| uses: rojopolis/[email protected] | |
| with: | |
| config_path: '.github/workflows/config/spellcheck_config.yml' | |
| output_file: rst_spellcheck.txt | |
| task_name: rst | |
| source_files: ${{ join(fromJSON(needs.filters.outputs.json).files.rst, ' ') || '*.nonexistent' }} | |
| - name: "C++ files (headers)" | |
| uses: rojopolis/[email protected] | |
| with: | |
| config_path: '.github/workflows/config/spellcheck_config.yml' | |
| output_file: cxx_headers_spellcheck.txt | |
| task_name: cxx_headers | |
| source_files: ${{ join(fromJSON(needs.filters.outputs.json).files.cxx_headers, ' ') || '*.nonexistent' }} | |
| - name: "C++ files (examples)" | |
| uses: rojopolis/[email protected] | |
| with: | |
| config_path: '.github/workflows/config/spellcheck_config.yml' | |
| output_file: cxx_examples_spellcheck.txt | |
| task_name: cxx_examples | |
| source_files: ${{ join(fromJSON(needs.filters.outputs.json).files.cxx_examples, ' ') || '*.nonexistent' }} | |
| - name: "Python files" | |
| uses: rojopolis/[email protected] | |
| with: | |
| config_path: '.github/workflows/config/spellcheck_config.yml' | |
| output_file: python_spellcheck.txt | |
| task_name: python | |
| source_files: ${{ join(fromJSON(needs.filters.outputs.json).files.python, ' ') || '*.nonexistent' }} | |
| - name: Create summary | |
| run: | | |
| function create_summary { | |
| status=`cat $2_spellcheck.txt | grep "Spelling check" | cut -d ' ' -f 3 | tr -d '!'` | |
| if [ "$status" == "passed" ]; then echo 0; else echo 1; fi | |
| echo "## $1 Check" >> $GITHUB_STEP_SUMMARY | |
| echo "Spell check ${status}." >> $GITHUB_STEP_SUMMARY | |
| echo "Output for $1 files:" >> $GITHUB_STEP_SUMMARY | |
| echo '```text' >> $GITHUB_STEP_SUMMARY | |
| cat $2_spellcheck.txt >> $GITHUB_STEP_SUMMARY | |
| echo '```' >> $GITHUB_STEP_SUMMARY | |
| } | |
| md_status=`create_summary Markdown markdown` | |
| rst_status=`create_summary reStructuredText rst` | |
| cxx_h_status=`create_summary "C++ Headers" cxx_headers` | |
| cxx_ex_status=`create_summary "C++ Examples" cxx_examples` | |
| py_status=`create_summary Python python` | |
| if [ ! "$md_status" -eq 0 ]; then exit 1; fi | |
| if [ ! "$rst_status" -eq 0 ]; then exit 2; fi | |
| if [ ! "$cxx_h_status" -eq 0 ]; then exit 3; fi | |
| if [ ! "$cxx_ex_status" -eq 0 ]; then exit 4; fi | |
| if [ ! "$py_status" -eq 0 ]; then exit 5; fi |