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add tagset support for select-by-tag #86

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add tagset support for select-by-tag #86

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@jperez999 jperez999 self-assigned this May 6, 2022
@jperez999 jperez999 added the enhancement New feature or request label May 6, 2022
@jperez999 jperez999 added this to the Merlin 22.05 milestone May 6, 2022
@jperez999 jperez999 linked an issue May 6, 2022 that may be closed by this pull request
[FEA] select_by_tag by should accept a TagSet as a param #85
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@jperez999 jperez999 requested a review from karlhigley May 6, 2022 16:19
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GitHub pull request #86 of commit 5ab18313ac06faa3f88773f50a8228488bb406c6, no merge conflicts.
Running as SYSTEM
Setting status of 5ab18313ac06faa3f88773f50a8228488bb406c6 to PENDING with url https://10.20.13.93:8080/job/merlin_core/48/console and message: 'Pending'
Using context: Jenkins
Building on master in workspace /var/jenkins_home/workspace/merlin_core
using credential ce87ff3c-94f0-400a-8303-cb4acb4918b5
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/NVIDIA-Merlin/core # timeout=10
Fetching upstream changes from https://github.com/NVIDIA-Merlin/core
 > git --version # timeout=10
using GIT_ASKPASS to set credentials login for merlin-systems username and pass
 > git fetch --tags --force --progress -- https://github.com/NVIDIA-Merlin/core +refs/pull/86/*:refs/remotes/origin/pr/86/* # timeout=10
 > git rev-parse 5ab18313ac06faa3f88773f50a8228488bb406c6^{commit} # timeout=10
Checking out Revision 5ab18313ac06faa3f88773f50a8228488bb406c6 (detached)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 5ab18313ac06faa3f88773f50a8228488bb406c6 # timeout=10
Commit message: "add tagset support for select-by-tag"
 > git rev-list --no-walk cb5157148aa2ec6872698ede29cd960cc9f44aae # timeout=10
[merlin_core] $ /bin/bash /tmp/jenkins5337440993692448990.sh
Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
Requirement already satisfied: setuptools in /usr/local/lib/python3.8/dist-packages (61.0.0)
Collecting setuptools
  Downloading setuptools-62.1.0-py3-none-any.whl (1.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 17.4 MB/s eta 0:00:00
Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 61.0.0
    Uninstalling setuptools-61.0.0:
      Successfully uninstalled setuptools-61.0.0
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
google-auth 1.35.0 requires cachetools<5.0,>=2.0.0, but you have cachetools 5.0.0 which is incompatible.
tensorflow-gpu 2.8.0 requires keras<2.9,>=2.8.0rc0, but you have keras 2.6.0 which is incompatible.
tensorflow-gpu 2.8.0 requires tensorboard<2.9,>=2.8, but you have tensorboard 2.6.0 which is incompatible.
Successfully installed setuptools-62.1.0
============================= test session starts ==============================
platform linux -- Python 3.8.10, pytest-7.1.2, pluggy-1.0.0
rootdir: /var/jenkins_home/workspace/merlin_core/core, configfile: pyproject.toml
plugins: xdist-2.5.0, forked-1.4.0, cov-3.0.0
collected 342 items / 1 skipped

tests/unit/core/test_dispatch.py ..                                      [  0%]

tests/unit/dag/test_base_operator.py ....                                [  1%]

tests/unit/dag/test_column_selector.py ..........................        [  9%]

tests/unit/dag/test_tags.py ......                                       [ 11%]

tests/unit/dag/ops/test_selection.py ...                                 [ 11%]

tests/unit/io/test_io.py ............................................... [ 25%]

................................................................         [ 44%]

tests/unit/schema/test_column_schemas.py ............................... [ 53%]

........................................................................ [ 74%]

.......................................................................  [ 95%]

tests/unit/schema/test_schema.py ......                                  [ 97%]

tests/unit/schema/test_schema_io.py ..                                   [ 97%]

tests/unit/utils/test_utils.py ........                                  [100%]


=============================== warnings summary ===============================

tests/unit/dag/test_base_operator.py: 4 warnings

tests/unit/io/test_io.py: 72 warnings

/usr/lib/python3.8/site-packages/cudf/core/dataframe.py:1253: UserWarning: The deep parameter is ignored and is only included for pandas compatibility.

warnings.warn(


tests/unit/io/test_io.py::test_validate_and_regenerate_dataset

/var/jenkins_home/workspace/merlin_core/core/merlin/io/parquet.py:551: DeprecationWarning: 'ParquetDataset.pieces' attribute is deprecated as of pyarrow 5.0.0 and will be removed in a future version. Specify 'use_legacy_dataset=False' while constructing the ParquetDataset, and then use the '.fragments' attribute instead.

paths = [p.path for p in pa_dataset.pieces]


tests/unit/utils/test_utils.py::test_nvt_distributed[True-True]

/var/jenkins_home/.local/lib/python3.8/site-packages/distributed/node.py:160: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 39285 instead

warnings.warn(


tests/unit/utils/test_utils.py::test_nvt_distributed[True-False]

/var/jenkins_home/.local/lib/python3.8/site-packages/distributed/node.py:160: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 32909 instead

warnings.warn(


tests/unit/utils/test_utils.py::test_nvt_distributed[False-True]

/var/jenkins_home/.local/lib/python3.8/site-packages/distributed/node.py:160: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 33219 instead

warnings.warn(


tests/unit/utils/test_utils.py::test_nvt_distributed[False-False]

/var/jenkins_home/.local/lib/python3.8/site-packages/distributed/node.py:160: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 45695 instead

warnings.warn(


tests/unit/utils/test_utils.py::test_nvt_distributed_force[True]

/var/jenkins_home/.local/lib/python3.8/site-packages/distributed/node.py:160: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 36981 instead

warnings.warn(


tests/unit/utils/test_utils.py::test_nvt_distributed_force[False]

/var/jenkins_home/.local/lib/python3.8/site-packages/distributed/node.py:160: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 41083 instead

warnings.warn(


-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

================= 342 passed, 1 skipped, 83 warnings in 52.24s =================

Performing Post build task...

Match found for : : True

Logical operation result is TRUE

Running script  : #!/bin/bash

cd /var/jenkins_home/

CUDA_VISIBLE_DEVICES=1 python test_res_push.py "https://api.GitHub.com/repos/NVIDIA-Merlin/core/issues/$ghprbPullId/comments" "/var/jenkins_home/jobs/$JOB_NAME/builds/$BUILD_NUMBER/log"

[merlin_core] $ /bin/bash /tmp/jenkins2340693349220524093.sh

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github-actions bot commented May 6, 2022

Documentation preview

https://nvidia-merlin.github.io/core/review/pr-86

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Looks good, needs a test

@karlhigley karlhigley modified the milestones: Merlin 22.05, Merlin 22.06 May 9, 2022
karlhigley
karlhigley suggested changes May 10, 2022
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Needs a test

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Click to view CI Results
GitHub pull request #86 of commit 4ee61b6db84b1e38cf51e02e00fb36a615b6980a, no merge conflicts.
Running as SYSTEM
Setting status of 4ee61b6db84b1e38cf51e02e00fb36a615b6980a to PENDING with url https://10.20.13.93:8080/job/merlin_core/105/console and message: 'Pending'
Using context: Jenkins
Building on master in workspace /var/jenkins_home/workspace/merlin_core
using credential ce87ff3c-94f0-400a-8303-cb4acb4918b5
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/NVIDIA-Merlin/core # timeout=10
Fetching upstream changes from https://github.com/NVIDIA-Merlin/core
 > git --version # timeout=10
using GIT_ASKPASS to set credentials login for merlin-systems username and pass
 > git fetch --tags --force --progress -- https://github.com/NVIDIA-Merlin/core +refs/pull/86/*:refs/remotes/origin/pr/86/* # timeout=10
 > git rev-parse 4ee61b6db84b1e38cf51e02e00fb36a615b6980a^{commit} # timeout=10
Checking out Revision 4ee61b6db84b1e38cf51e02e00fb36a615b6980a (detached)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 4ee61b6db84b1e38cf51e02e00fb36a615b6980a # timeout=10
Commit message: "Merge branch 'main' into fix-select-tag"
 > git rev-list --no-walk 5498b20bf5a9ce69f58777d7e5abefa2a7707c7c # timeout=10
[merlin_core] $ /bin/bash /tmp/jenkins13653228622583212179.sh
============================= test session starts ==============================
platform linux -- Python 3.8.10, pytest-7.1.2, pluggy-1.0.0
rootdir: /var/jenkins_home/workspace/merlin_core/core, configfile: pyproject.toml
plugins: anyio-3.6.1, xdist-2.5.0, forked-1.4.0, cov-3.0.0
collected 343 items / 1 skipped

tests/unit/core/test_dispatch.py ..                                      [  0%]

tests/unit/dag/test_base_operator.py ....                                [  1%]

tests/unit/dag/test_column_selector.py ..........................        [  9%]

tests/unit/dag/test_graph.py .                                           [  9%]

tests/unit/dag/test_tags.py ......                                       [ 11%]

tests/unit/dag/ops/test_selection.py ...                                 [ 12%]

tests/unit/io/test_io.py ............................................... [ 25%]

................................................................         [ 44%]

tests/unit/schema/test_column_schemas.py ............................... [ 53%]

........................................................................ [ 74%]

.......................................................................  [ 95%]

tests/unit/schema/test_schema.py ......                                  [ 97%]

tests/unit/schema/test_schema_io.py ..                                   [ 97%]

tests/unit/utils/test_utils.py ........                                  [100%]


=============================== warnings summary ===============================

tests/unit/dag/test_base_operator.py: 4 warnings

tests/unit/io/test_io.py: 71 warnings

/usr/local/lib/python3.8/dist-packages/cudf/core/frame.py:384: UserWarning: The deep parameter is ignored and is only included for pandas compatibility.

warnings.warn(


tests/unit/io/test_io.py::test_validate_and_regenerate_dataset

/var/jenkins_home/workspace/merlin_core/core/merlin/io/parquet.py:551: DeprecationWarning: 'ParquetDataset.pieces' attribute is deprecated as of pyarrow 5.0.0 and will be removed in a future version. Specify 'use_legacy_dataset=False' while constructing the ParquetDataset, and then use the '.fragments' attribute instead.

paths = [p.path for p in pa_dataset.pieces]


tests/unit/utils/test_utils.py::test_serial_context[True]

/usr/local/lib/python3.8/dist-packages/tornado/ioloop.py:350: DeprecationWarning: make_current is deprecated; start the event loop first

self.make_current()


tests/unit/utils/test_utils.py::test_nvt_distributed[True-True]

/usr/local/lib/python3.8/dist-packages/distributed/node.py:180: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 32893 instead

warnings.warn(


tests/unit/utils/test_utils.py::test_nvt_distributed[True-False]

/usr/local/lib/python3.8/dist-packages/distributed/node.py:180: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 45651 instead

warnings.warn(


tests/unit/utils/test_utils.py::test_nvt_distributed[False-True]

/usr/local/lib/python3.8/dist-packages/distributed/node.py:180: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 38109 instead

warnings.warn(


tests/unit/utils/test_utils.py::test_nvt_distributed[False-False]

/usr/local/lib/python3.8/dist-packages/distributed/node.py:180: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 35445 instead

warnings.warn(


tests/unit/utils/test_utils.py::test_nvt_distributed_force[True]

/usr/local/lib/python3.8/dist-packages/distributed/node.py:180: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 43763 instead

warnings.warn(


tests/unit/utils/test_utils.py::test_nvt_distributed_force[False]

/usr/local/lib/python3.8/dist-packages/distributed/node.py:180: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 40607 instead

warnings.warn(


-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

================= 343 passed, 1 skipped, 83 warnings in 54.66s =================

Performing Post build task...

Match found for : : True

Logical operation result is TRUE

Running script  : #!/bin/bash

cd /var/jenkins_home/

CUDA_VISIBLE_DEVICES=1 python test_res_push.py "https://api.GitHub.com/repos/NVIDIA-Merlin/core/issues/$ghprbPullId/comments" "/var/jenkins_home/jobs/$JOB_NAME/builds/$BUILD_NUMBER/log"

[merlin_core] $ /bin/bash /tmp/jenkins4710867292400428964.sh

@karlhigley karlhigley modified the milestones: Merlin 22.06, Merlin 23.04 Apr 4, 2023
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[FEA] select_by_tag by should accept a TagSet as a param
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