Deploying to gh-pages from @ 5d1c202 🚀

genindex.html

@@ -172,18 +172,30 @@ <h2 id="D">D</h2>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="reasoner_validator.report.html#reasoner_validator.report.ReportJsonEncoder.default">default() (reasoner_validator.report.ReportJsonEncoder method)</a>
 </li>
+      <li><a href="reasoner_validator.trapi.mapping.html#reasoner_validator.trapi.mapping.MappingValidator.default_target">default_target (reasoner_validator.trapi.mapping.MappingValidator attribute)</a>
+
+      <ul>
+        <li><a href="reasoner_validator.trapi.html#reasoner_validator.trapi.TRAPISchemaValidator.default_target">(reasoner_validator.trapi.TRAPISchemaValidator attribute)</a>
+</li>
+      </ul></li>
+      <li><a href="reasoner_validator.trapi.mapping.html#reasoner_validator.trapi.mapping.MappingValidator.default_test">default_test (reasoner_validator.trapi.mapping.MappingValidator attribute)</a>
+
+      <ul>
+        <li><a href="reasoner_validator.trapi.html#reasoner_validator.trapi.TRAPISchemaValidator.default_test">(reasoner_validator.trapi.TRAPISchemaValidator attribute)</a>
+</li>
+      </ul></li>
       <li><a href="reasoner_validator.report.html#reasoner_validator.report.ValidationReporter.DEFAULT_TRAPI_VERSION">DEFAULT_TRAPI_VERSION (reasoner_validator.report.ValidationReporter attribute)</a>
 </li>
       <li><a href="reasoner_validator.validation_codes.html#reasoner_validator.validation_codes.CodeDictionary.DESCRIPTION">DESCRIPTION (reasoner_validator.validation_codes.CodeDictionary attribute)</a>
 </li>
       <li><a href="reasoner_validator.validation_codes.html#reasoner_validator.validation_codes.CodeDictionary.display">display() (reasoner_validator.validation_codes.CodeDictionary class method)</a>
 </li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="reasoner_validator.report.html#reasoner_validator.report.ValidationReporter.dump">dump() (reasoner_validator.report.ValidationReporter method)</a>
 </li>
       <li><a href="reasoner_validator.report.html#reasoner_validator.report.ValidationReporter.dump_all_messages">dump_all_messages() (reasoner_validator.report.ValidationReporter method)</a>
 </li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="reasoner_validator.report.html#reasoner_validator.report.ValidationReporter.dump_critical">dump_critical() (reasoner_validator.report.ValidationReporter method)</a>
 </li>
       <li><a href="reasoner_validator.report.html#reasoner_validator.report.ValidationReporter.dump_errors">dump_errors() (reasoner_validator.report.ValidationReporter method)</a>
@@ -384,6 +396,12 @@ <h2 id="M">M</h2>
 </li>
       <li><a href="reasoner_validator.validation_codes.html#reasoner_validator.validation_codes.CodeDictionary.MESSAGE">MESSAGE (reasoner_validator.validation_codes.CodeDictionary attribute)</a>
 </li>
+      <li><a href="reasoner_validator.trapi.mapping.html#reasoner_validator.trapi.mapping.MappingValidator.messages">messages (reasoner_validator.trapi.mapping.MappingValidator attribute)</a>
+
+      <ul>
+        <li><a href="reasoner_validator.trapi.html#reasoner_validator.trapi.TRAPISchemaValidator.messages">(reasoner_validator.trapi.TRAPISchemaValidator attribute)</a>
+</li>
+      </ul></li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="reasoner_validator.biolink.html#reasoner_validator.biolink.BiolinkValidator.minimum_required_biolink_version">minimum_required_biolink_version() (reasoner_validator.biolink.BiolinkValidator method)</a>
@@ -540,16 +558,22 @@ <h2 id="S">S</h2>
 </li>
       <li><a href="reasoner_validator.html#reasoner_validator.validator.TRAPIResponseValidator.sanitize_workflow">sanitize_workflow() (reasoner_validator.validator.TRAPIResponseValidator method)</a>
 </li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="reasoner_validator.versioning.html#reasoner_validator.versioning.SemVer">SemVer (class in reasoner_validator.versioning)</a>
 </li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="reasoner_validator.versioning.html#reasoner_validator.versioning.SemVerError">SemVerError</a>
 </li>
       <li><a href="reasoner_validator.versioning.html#reasoner_validator.versioning.SemVerUnderspecified">SemVerUnderspecified</a>
 </li>
       <li><a href="reasoner_validator.biolink.html#reasoner_validator.biolink.BiolinkValidator.set_nodes">set_nodes() (reasoner_validator.biolink.BiolinkValidator method)</a>
 </li>
+      <li><a href="reasoner_validator.trapi.mapping.html#reasoner_validator.trapi.mapping.MappingValidator.strict_validation">strict_validation (reasoner_validator.trapi.mapping.MappingValidator attribute)</a>
+
+      <ul>
+        <li><a href="reasoner_validator.trapi.html#reasoner_validator.trapi.TRAPISchemaValidator.strict_validation">(reasoner_validator.trapi.TRAPISchemaValidator attribute)</a>
+</li>
+      </ul></li>
   </ul></td>
 </tr></table>
 

reasoner_validator.trapi.html

@@ -47,12 +47,16 @@
 <li class="toctree-l1 current"><a class="current reference internal" href="#">TRAPI Schema Validation</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="#reasoner_validator.trapi.TRAPIAccessError"><code class="docutils literal notranslate"><span class="pre">TRAPIAccessError</span></code></a></li>
 <li class="toctree-l2"><a class="reference internal" href="#reasoner_validator.trapi.TRAPISchemaValidator"><code class="docutils literal notranslate"><span class="pre">TRAPISchemaValidator</span></code></a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.TRAPISchemaValidator.default_target"><code class="docutils literal notranslate"><span class="pre">TRAPISchemaValidator.default_target</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.TRAPISchemaValidator.default_test"><code class="docutils literal notranslate"><span class="pre">TRAPISchemaValidator.default_test</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.TRAPISchemaValidator.get_trapi_version"><code class="docutils literal notranslate"><span class="pre">TRAPISchemaValidator.get_trapi_version()</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.TRAPISchemaValidator.is_valid_trapi_query"><code class="docutils literal notranslate"><span class="pre">TRAPISchemaValidator.is_valid_trapi_query()</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.TRAPISchemaValidator.merge"><code class="docutils literal notranslate"><span class="pre">TRAPISchemaValidator.merge()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.TRAPISchemaValidator.messages"><code class="docutils literal notranslate"><span class="pre">TRAPISchemaValidator.messages</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.TRAPISchemaValidator.minimum_required_trapi_version"><code class="docutils literal notranslate"><span class="pre">TRAPISchemaValidator.minimum_required_trapi_version()</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.TRAPISchemaValidator.report_header"><code class="docutils literal notranslate"><span class="pre">TRAPISchemaValidator.report_header()</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.TRAPISchemaValidator.reset_trapi_version"><code class="docutils literal notranslate"><span class="pre">TRAPISchemaValidator.reset_trapi_version()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.TRAPISchemaValidator.strict_validation"><code class="docutils literal notranslate"><span class="pre">TRAPISchemaValidator.strict_validation</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.TRAPISchemaValidator.to_dict"><code class="docutils literal notranslate"><span class="pre">TRAPISchemaValidator.to_dict()</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.TRAPISchemaValidator.validate"><code class="docutils literal notranslate"><span class="pre">TRAPISchemaValidator.validate()</span></code></a></li>
 </ul>
@@ -272,6 +276,16 @@
 </tr>
 </tbody>
 </table>
+<dl class="py attribute">
+<dt class="sig sig-object py" id="reasoner_validator.trapi.TRAPISchemaValidator.default_target">
+<span class="sig-name descname"><span class="pre">default_target</span></span><em class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">str</span></em><a class="headerlink" href="#reasoner_validator.trapi.TRAPISchemaValidator.default_target" title="Permalink to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="reasoner_validator.trapi.TRAPISchemaValidator.default_test">
+<span class="sig-name descname"><span class="pre">default_test</span></span><em class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">str</span></em><a class="headerlink" href="#reasoner_validator.trapi.TRAPISchemaValidator.default_test" title="Permalink to this definition"></a></dt>
+<dd></dd></dl>
+
 <dl class="py method">
 <dt class="sig sig-object py" id="reasoner_validator.trapi.TRAPISchemaValidator.get_trapi_version">
 <span class="sig-name descname"><span class="pre">get_trapi_version</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><span class="pre">str</span></span></span><a class="headerlink" href="#reasoner_validator.trapi.TRAPISchemaValidator.get_trapi_version" title="Permalink to this definition"></a></dt>
@@ -319,6 +333,11 @@
 </dl>
 </dd></dl>
 
+<dl class="py attribute">
+<dt class="sig sig-object py" id="reasoner_validator.trapi.TRAPISchemaValidator.messages">
+<span class="sig-name descname"><span class="pre">messages</span></span><em class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">MESSAGES_BY_TARGET</span></em><a class="headerlink" href="#reasoner_validator.trapi.TRAPISchemaValidator.messages" title="Permalink to this definition"></a></dt>
+<dd></dd></dl>
+
 <dl class="py method">
 <dt class="sig sig-object py" id="reasoner_validator.trapi.TRAPISchemaValidator.minimum_required_trapi_version">
 <span class="sig-name descname"><span class="pre">minimum_required_trapi_version</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">version</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><span class="pre">bool</span></span></span><a class="headerlink" href="#reasoner_validator.trapi.TRAPISchemaValidator.minimum_required_trapi_version" title="Permalink to this definition"></a></dt>
@@ -360,6 +379,11 @@
 :return: None</p>
 </dd></dl>
 
+<dl class="py attribute">
+<dt class="sig sig-object py" id="reasoner_validator.trapi.TRAPISchemaValidator.strict_validation">
+<span class="sig-name descname"><span class="pre">strict_validation</span></span><em class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">bool</span><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><span class="pre">None</span></em><a class="headerlink" href="#reasoner_validator.trapi.TRAPISchemaValidator.strict_validation" title="Permalink to this definition"></a></dt>
+<dd></dd></dl>
+
 <dl class="py method">
 <dt class="sig sig-object py" id="reasoner_validator.trapi.TRAPISchemaValidator.to_dict">
 <span class="sig-name descname"><span class="pre">to_dict</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><span class="pre">Dict</span></span></span><a class="headerlink" href="#reasoner_validator.trapi.TRAPISchemaValidator.to_dict" title="Permalink to this definition"></a></dt>

reasoner_validator.trapi.mapping.html

@@ -48,6 +48,10 @@
 <li class="toctree-l1 current"><a class="current reference internal" href="#">TRAPI Result Mapping</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="#reasoner_validator.trapi.mapping.MappingValidator"><code class="docutils literal notranslate"><span class="pre">MappingValidator</span></code></a><ul>
 <li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.mapping.MappingValidator.check_dangling_references"><code class="docutils literal notranslate"><span class="pre">MappingValidator.check_dangling_references()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.mapping.MappingValidator.default_target"><code class="docutils literal notranslate"><span class="pre">MappingValidator.default_target</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.mapping.MappingValidator.default_test"><code class="docutils literal notranslate"><span class="pre">MappingValidator.default_test</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.mapping.MappingValidator.messages"><code class="docutils literal notranslate"><span class="pre">MappingValidator.messages</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#reasoner_validator.trapi.mapping.MappingValidator.strict_validation"><code class="docutils literal notranslate"><span class="pre">MappingValidator.strict_validation</span></code></a></li>
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="#reasoner_validator.trapi.mapping.check_node_edge_mappings"><code class="docutils literal notranslate"><span class="pre">check_node_edge_mappings()</span></code></a></li>
@@ -236,6 +240,26 @@
 <span class="sig-name descname"><span class="pre">check_dangling_references</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">graph</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">Dict</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#reasoner_validator.trapi.mapping.MappingValidator.check_dangling_references" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
+<dl class="py attribute">
+<dt class="sig sig-object py" id="reasoner_validator.trapi.mapping.MappingValidator.default_target">
+<span class="sig-name descname"><span class="pre">default_target</span></span><em class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">str</span></em><a class="headerlink" href="#reasoner_validator.trapi.mapping.MappingValidator.default_target" title="Permalink to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="reasoner_validator.trapi.mapping.MappingValidator.default_test">
+<span class="sig-name descname"><span class="pre">default_test</span></span><em class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">str</span></em><a class="headerlink" href="#reasoner_validator.trapi.mapping.MappingValidator.default_test" title="Permalink to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="reasoner_validator.trapi.mapping.MappingValidator.messages">
+<span class="sig-name descname"><span class="pre">messages</span></span><em class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">MESSAGES_BY_TARGET</span></em><a class="headerlink" href="#reasoner_validator.trapi.mapping.MappingValidator.messages" title="Permalink to this definition"></a></dt>
+<dd></dd></dl>
+
+<dl class="py attribute">
+<dt class="sig sig-object py" id="reasoner_validator.trapi.mapping.MappingValidator.strict_validation">
+<span class="sig-name descname"><span class="pre">strict_validation</span></span><em class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">bool</span><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><span class="pre">None</span></em><a class="headerlink" href="#reasoner_validator.trapi.mapping.MappingValidator.strict_validation" title="Permalink to this definition"></a></dt>
+<dd></dd></dl>
+
 </dd></dl>
 
 <dl class="py function">