Skip to content

Schema and generated objects for biolink data model and upper ontology

Notifications You must be signed in to change notification settings

NCATS-Gamma/robokop-biolink-model

 
 

Repository files navigation

Build Status

biolink-models

Browse the model: https://biolink.github.io/biolink-model

Intro

A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations.

The immediate goal is to provide a reference datamodel that is independent of storage technology (solr, neo4j, csvs, etc).

The specification of the reference biolink model is a single YAML file following a custom meta-model. The basic elements of the YAML are:

  • definitions of upper level classes representing both named things (genes, phenotypes, etc) and associations between them
  • definitions of slots (aka properties) that can be used to relate members of these classes to other classes or datatypes

About

Schema and generated objects for biolink data model and upper ontology

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • Java 72.1%
  • Python 27.7%
  • Other 0.2%