Convert container lecture to Quarto #160
Workflow file for this run
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| name: lectures | |
| # Controls when the action will run. Triggers the workflow on push or pull | |
| # request events but only for the main branch | |
| on: | |
| push: | |
| paths: | |
| - 'lectures/*/*.Rmd' | |
| - 'lectures/*/*.ipynb' | |
| - '.github/workflows/lectures.yml' | |
| pull_request: | |
| paths: | |
| - 'lectures/*/*.Rmd' | |
| - 'lectures/*/*.ipynb' | |
| branches: | |
| - main | |
| jobs: | |
| render: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: conda-incubator/[email protected] | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: lecture-env | |
| environment-file: lectures/environment.yml | |
| use-mamba: true | |
| channel-priority: strict | |
| - name: Render lectures | |
| run: | | |
| cd lectures | |
| snakemake -c 1 --use-conda |