QuickMotif

The aim of this software is to make motif analysis easier and faster. The software takes as input fasta files and can help you to:

Perform Gibbs sampling for a specific k-mer length Analyze the frequency of nucleotides Parse DNA Generate random sequences of length k

Example of Gibbs sampling matrix

Installation

To start with you can clone the repository :

  git clone https://github.com/MichielTaw/QuickMotif.git

Import function

import QuickMotif
from QuickMotif.src.fasta import Fasta
from QuickMotif.src.helper import generate_k_random, random_sequence_generator, update_k_mers
from QuickMotif.src.matrix import Matrix
from QuickMotif.src.sequence import Sequence
}

Tutorial

**For more check the Tutorial.ipynb

Authors

• @MichielTawdarous

Hi, I'm Michiel! 👋

I'm a PharmaD student at university of Paris, don't hesitate to contact me for any question about the software at this mail : [email protected]