reporting errors

[colindaven]

Possible python pandas version problems?

CF_small test dataset

#result:
no `*.bam.us` for haybaler

• Could be that the ref.tmp was missing/incorrect?
• problem with pandas version (no, likely not, version seems ok)
• Why were bam.txt files missing?

working on sample 3_sm_R1.ndp.trm.s.mm.dup.mq30.calmd_subsamples

Aborted!
working on sample 4_sm_R1.ndp.trm.s.mm.dup.mq30.calmd_subsamples
Traceback (most recent call last):
  File "main.py", line 1, in <module>
    import pandas as pd
  File "/mnt/ngsnfs/tools/miniconda3/envs/wochenende/lib/python3.7/site-packages/pandas/__init__.py", line 51, in <module>
    from pandas.core.api import (
  File "/mnt/ngsnfs/tools/miniconda3/envs/wochenende/lib/python3.7/site-packages/pandas/core/api.py", line 15, in <module>
    from pandas.core.arrays import Categorical
  File "/mnt/ngsnfs/tools/miniconda3/envs/wochenende/lib/python3.7/site-packages/pandas/core/arrays/__init__.py", line 8, in <module>
    from pandas.core.arrays.datetimes import DatetimeArray
  File "/mnt/ngsnfs/tools/miniconda3/envs/wochenende/lib/python3.7/site-packages/pandas/core/arrays/datetimes.py", line 52, in <module>
    from pandas.core.arrays._ranges import generate_regular_range
  File "<frozen importlib._bootstrap>", line 980, in _find_and_load
  File "<frozen importlib._bootstrap>", line 149, in __enter__
  File "<frozen importlib._bootstrap>", line 86, in acquire
KeyboardInterrupt
working on sample 5_sm_R1.ndp.trm.s.mm.dup.mq30.calmd_subsamples
Traceback (most recent call last):
  File "main.py", line 1, in <module>
    import pandas as pd
  File "/mnt/ngsnfs/tools/miniconda3/envs/wochenende/lib/python3.7/site-packages/pandas/__init__.py", line 51, in <module>
    from pandas.core.api import (
  File "/mnt/ngsnfs/tools/miniconda3/envs/wochenende/lib/python3.7/site-packages/pandas/core/api.py", line 31, in <module>
    from pandas.core.groupby import Grouper, NamedAgg
  File "/mnt/ngsnfs/tools/miniconda3/envs/wochenende/lib/python3.7/site-packages/pandas/core/groupby/__init__.py", line 1, in <module>
    from pandas.core.groupby.generic import DataFrameGroupBy, NamedAgg, SeriesGroupBy
  File "/mnt/ngsnfs/tools/miniconda3/envs/wochenende/lib/python3.7/site-packages/pandas/core/groupby/generic.py", line 65, in <module>
    from pandas.core.frame import DataFrame
  File "/mnt/ngsnfs/tools/miniconda3/envs/wochenende/lib/python3.7/site-packages/pandas/core/frame.py", line 119, in <module>
    from pandas.core import algorithms, common as com, generic, nanops, ops
  File "/mnt/ngsnfs/tools/miniconda3/envs/wochenende/lib/python3.7/site-packages/pandas/core/generic.py", line 91, in <module>
    from pandas.core import arraylike, indexing, missing, nanops
  File "<frozen importlib._bootstrap>", line 983, in _find_and_load
  File "<frozen importlib._bootstrap>", line 967, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 677, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 724, in exec_module