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@MHH-RCUG

Research Core Unit Genomics at Hannover Medical School

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  1. nf_wochenende nf_wochenende Public

    A nextflow version of the Wochenende reference metagenome binning and visualization pipeline

    Python 13 2

  2. haybaler haybaler Public

    Haybaler: Collate/integrate reporting CSV or bam.txt files from the Wochenende pipeline https://github.com/MHH-RCUG/Wochenende

    Python 5 3

  3. scrnaseq_app scrnaseq_app Public

    UNDER DEVELOPMENT: Shiny app for visualisation of scRNASeq data

    R 2 4

  4. Wochenende Wochenende Public

    Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3

    Python 37 16

Repositories

Showing 10 of 13 repositories
  • sc-analysis Public

    UNDER DEVELOPMENT: Workflows for single-cell RNA-seq analysis

    MHH-RCUG/sc-analysis’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jan 8, 2025
  • nf_wochenende Public

    A nextflow version of the Wochenende reference metagenome binning and visualization pipeline

    MHH-RCUG/nf_wochenende’s past year of commit activity
    Python 13 MIT 2 15 0 Updated Dec 14, 2024
  • Heatmaps Public

    Heatmap script to compare taxon abundance using output from the Wochenende pipeline

    MHH-RCUG/Heatmaps’s past year of commit activity
    Python 4 2 4 0 Updated Sep 4, 2024
  • AlethieG Public Forked from ArnoKappe/MetaG

    AlethieG - A metagenomic analysis tool - Adopted for Wochenende

    MHH-RCUG/AlethieG’s past year of commit activity
    Java 0 MIT 1 0 0 Updated Aug 22, 2023
  • WochenendeAlethieG Public Forked from MHH-RCUG/Wochenende

    Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3

    MHH-RCUG/WochenendeAlethieG’s past year of commit activity
    Python 0 MIT 16 0 0 Updated Dec 2, 2022
  • scrnaseq Public Forked from ktrns/scrnaseq

    UNDER DEVELOPMENT: Workflow for single-cell RNA-seq analysis using Seurat

    MHH-RCUG/scrnaseq’s past year of commit activity
    HTML 0 MIT 16 0 0 Updated Sep 8, 2022
  • nf_reporter Public

    Integrate metagenomic reports from our Wochenende metagenomics pipeline, raspir, growth rates and other tools using Nextflow

    MHH-RCUG/nf_reporter’s past year of commit activity
    Python 2 MIT 0 10 0 Updated Aug 30, 2022
  • haybaler Public

    Haybaler: Collate/integrate reporting CSV or bam.txt files from the Wochenende pipeline https://github.com/MHH-RCUG/Wochenende

    MHH-RCUG/haybaler’s past year of commit activity
    Python 5 MIT 3 5 0 Updated Aug 30, 2022
  • Wochenende Public

    Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3

    MHH-RCUG/Wochenende’s past year of commit activity
    Python 37 MIT 16 23 0 Updated Aug 30, 2022
  • scrnaseq_modular_extensions Public

    UNDER DEVELOPMENT: Workflows for modular extensions of single-cell RNA-seq analysis performed with the scrnaseq script https://github.com/ktrns/scrnaseq

    MHH-RCUG/scrnaseq_modular_extensions’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 11, 2022
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