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Update DiskArrays dependency to 0.4 #153

Update DiskArrays dependency to 0.4

Update DiskArrays dependency to 0.4 #153

Triggered via pull request April 2, 2024 09:08
Status Failure
Total duration 3m 11s
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4 errors and 1 notice
Documentation: docs/src/tutorial.md#L170
doctest failure in src/tutorial.md:170-184 ```jldoctest compress julia> using Zarr julia> compressor = Zarr.BloscCompressor(cname="zstd", clevel=3, shuffle=true) Zarr.BloscCompressor(0, 3, "zstd", 1) julia> data = Int32(1):Int32(100000000) 1:100000000 julia> z = Zarr.zcreate(Int32,10000, 10000, chunks = (1000,1000),compressor=compressor) ZArray{Int32} of size 10000 x 10000 julia> z[:,:]=data 1:100000000 ``` Subexpression: z[:,:]=data Evaluated output: ERROR: MethodError: no method matching writeblock!(::UnitRange{Int32}, ::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::CartesianIndices{2, Tuple{UnitRange{Int64}, UnitRange{Int64}}}) Closest candidates are: writeblock!(::AbstractArray{<:Any, N}, !Matched::ZArray{<:Any, N}, !Matched::CartesianIndices{N, R} where R<:Tuple{Vararg{OrdinalRange{Int64, Int64}, N}}) where N @ Zarr ~/work/Zarr.jl/Zarr.jl/src/ZArray.jl:187 Stacktrace: [1] writeblock!(::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::UnitRange{Int32}, ::UnitRange{Int64}, ::Vararg{UnitRange{Int64}}) @ Zarr ~/work/Zarr.jl/Zarr.jl/src/ZArray.jl:248 [2] setindex_disk_nobatch!(a::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, v::UnitRange{Int32}, i::Tuple{Colon, Colon}) @ DiskArrays ~/.julia/packages/DiskArrays/UCuPC/src/diskarray.jl:302 [3] setindex_disk!(::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::UnitRange{Int32}, ::Function, ::Vararg{Function}) @ DiskArrays ~/.julia/packages/DiskArrays/UCuPC/src/diskarray.jl:317 [4] setindex!(::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::UnitRange{Int32}, ::Function, ::Function) @ DiskArrays ~/.julia/packages/DiskArrays/UCuPC/src/diskarray.jl:353 [5] top-level scope @ none:1 Expected output: 1:100000000 diff = Warning: Diff output requires color. 1:100000000ERROR: MethodError: no method matching writeblock!(::UnitRange{Int32}, ::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::CartesianIndices{2, Tuple{UnitRange{Int64}, UnitRange{Int64}}}) Closest candidates are: writeblock!(::AbstractArray{<:Any, N}, !Matched::ZArray{<:Any, N}, !Matched::CartesianIndices{N, R} where R<:Tuple{Vararg{OrdinalRange{Int64, Int64}, N}}) where N @ Zarr ~/work/Zarr.jl/Zarr.jl/src/ZArray.jl:187 Stacktrace: [1] writeblock!(::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::UnitRange{Int32}, ::UnitRange{Int64}, ::Vararg{UnitRange{Int64}}) @ Zarr ~/work/Zarr.jl/Zarr.jl/src/ZArray.jl:248 [2] setindex_disk_nobatch!(a::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, v::UnitRange{Int32}, i::Tuple{Colon, Colon}) @ DiskArrays ~/.julia/packages/DiskArrays/UCuPC/src/diskarray.jl:302 [3] setindex_disk!(::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::UnitRange{Int32}, ::Function, ::Vararg{Function}) @ DiskArrays ~/.julia/packages/DiskArrays/UCuPC/src/diskarray.jl:317 [4] setindex!(::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::UnitRange{Int32}, ::Function, ::Function) @ DiskArrays ~/.julia/packages/DiskArrays/UCuPC/src/diskarray.jl:353 [5] top-level scope @ none:1
Documentation: docs/src/tutorial.md#L190
doctest failure in src/tutorial.md:190-205 ```jldoctest compress julia> zinfo(z) Type : ZArray Data type : Int32 Shape : (10000, 10000) Chunk Shape : (1000, 1000) Order : C Read-Only : false Compressor : Zarr.BloscCompressor(0, 3, "zstd", 1) Filters : nothing Store type : Dictionary Storage No. bytes : 400000000 No. bytes stored : 2412289 Storage ratio : 165.81761140559857 Chunks initialized : 100/100 ``` Subexpression: zinfo(z) Evaluated output: Type : ZArray Data type : Int32 Shape : (10000, 10000) Chunk Shape : (1000, 1000) Order : C Read-Only : false Compressor : Zarr.BloscCompressor(0, 3, "zstd", 1) Filters : nothing Store type : Dictionary Storage No. bytes : 400000000 No. bytes stored : 0 Storage ratio : Inf Chunks initialized : 0/100 Expected output: Type : ZArray Data type : Int32 Shape : (10000, 10000) Chunk Shape : (1000, 1000) Order : C Read-Only : false Compressor : Zarr.BloscCompressor(0, 3, "zstd", 1) Filters : nothing Store type : Dictionary Storage No. bytes : 400000000 No. bytes stored : 2412289 Storage ratio : 165.81761140559857 Chunks initialized : 100/100 diff = Warning: Diff output requires color. Type : ZArray Data type : Int32 Shape : (10000, 10000) Chunk Shape : (1000, 1000) Order : C Read-Only : false Compressor : Zarr.BloscCompressor(0, 3, "zstd", 1) Filters : nothing Store type : Dictionary Storage No. bytes : 400000000 No. bytes stored : 2412289 0 Storage ratio : 165.81761140559857 Inf Chunks initialized : 100/1000/100
Documentation: docs/src/missings.md#L61
doctest failure in src/missings.md:61-75 ```jldoctest fillval julia> z = zopen(p, fill_as_missing=true) ZArray{Union{Missing, Int64}} of size 100 x 100 julia> eltype(z) Union{Missing, Int64} julia> z[8:12,1] 5-element reshape(::Matrix{Union{Missing, Int64}}, 5) with eltype Union{Missing, Int64}: missing missing missing 5 5 ``` Subexpression: z[8:12,1] Evaluated output: 5-element Vector{Union{Missing, Int64}}: missing missing missing 5 5 Expected output: 5-element reshape(::Matrix{Union{Missing, Int64}}, 5) with eltype Union{Missing, Int64}: missing missing missing 5 5 diff = Warning: Diff output requires color. 5-element reshape(::Matrix{Union{Missing, Int64}}, 5) with eltype Union{Missing, Int64}: Vector{Union{Missing, Int64}}: missing missing missing 5 5
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