Update DiskArrays dependency to 0.4 #153
Annotations
4 errors and 1 notice
Documentation:
docs/src/tutorial.md#L170
doctest failure in src/tutorial.md:170-184
```jldoctest compress
julia> using Zarr
julia> compressor = Zarr.BloscCompressor(cname="zstd", clevel=3, shuffle=true)
Zarr.BloscCompressor(0, 3, "zstd", 1)
julia> data = Int32(1):Int32(100000000)
1:100000000
julia> z = Zarr.zcreate(Int32,10000, 10000, chunks = (1000,1000),compressor=compressor)
ZArray{Int32} of size 10000 x 10000
julia> z[:,:]=data
1:100000000
```
Subexpression:
z[:,:]=data
Evaluated output:
ERROR: MethodError: no method matching writeblock!(::UnitRange{Int32}, ::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::CartesianIndices{2, Tuple{UnitRange{Int64}, UnitRange{Int64}}})
Closest candidates are:
writeblock!(::AbstractArray{<:Any, N}, !Matched::ZArray{<:Any, N}, !Matched::CartesianIndices{N, R} where R<:Tuple{Vararg{OrdinalRange{Int64, Int64}, N}}) where N
@ Zarr ~/work/Zarr.jl/Zarr.jl/src/ZArray.jl:187
Stacktrace:
[1] writeblock!(::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::UnitRange{Int32}, ::UnitRange{Int64}, ::Vararg{UnitRange{Int64}})
@ Zarr ~/work/Zarr.jl/Zarr.jl/src/ZArray.jl:248
[2] setindex_disk_nobatch!(a::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, v::UnitRange{Int32}, i::Tuple{Colon, Colon})
@ DiskArrays ~/.julia/packages/DiskArrays/UCuPC/src/diskarray.jl:302
[3] setindex_disk!(::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::UnitRange{Int32}, ::Function, ::Vararg{Function})
@ DiskArrays ~/.julia/packages/DiskArrays/UCuPC/src/diskarray.jl:317
[4] setindex!(::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::UnitRange{Int32}, ::Function, ::Function)
@ DiskArrays ~/.julia/packages/DiskArrays/UCuPC/src/diskarray.jl:353
[5] top-level scope
@ none:1
Expected output:
1:100000000
diff =
Warning: Diff output requires color.
1:100000000ERROR: MethodError: no method matching writeblock!(::UnitRange{Int32}, ::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::CartesianIndices{2, Tuple{UnitRange{Int64}, UnitRange{Int64}}})
Closest candidates are:
writeblock!(::AbstractArray{<:Any, N}, !Matched::ZArray{<:Any, N}, !Matched::CartesianIndices{N, R} where R<:Tuple{Vararg{OrdinalRange{Int64, Int64}, N}}) where N
@ Zarr ~/work/Zarr.jl/Zarr.jl/src/ZArray.jl:187
Stacktrace:
[1] writeblock!(::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::UnitRange{Int32}, ::UnitRange{Int64}, ::Vararg{UnitRange{Int64}})
@ Zarr ~/work/Zarr.jl/Zarr.jl/src/ZArray.jl:248
[2] setindex_disk_nobatch!(a::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, v::UnitRange{Int32}, i::Tuple{Colon, Colon})
@ DiskArrays ~/.julia/packages/DiskArrays/UCuPC/src/diskarray.jl:302
[3] setindex_disk!(::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::UnitRange{Int32}, ::Function, ::Vararg{Function})
@ DiskArrays ~/.julia/packages/DiskArrays/UCuPC/src/diskarray.jl:317
[4] setindex!(::ZArray{Int32, 2, Zarr.BloscCompressor, Zarr.DictStore}, ::UnitRange{Int32}, ::Function, ::Function)
@ DiskArrays ~/.julia/packages/DiskArrays/UCuPC/src/diskarray.jl:353
[5] top-level scope
@ none:1
|
Documentation:
docs/src/tutorial.md#L190
doctest failure in src/tutorial.md:190-205
```jldoctest compress
julia> zinfo(z)
Type : ZArray
Data type : Int32
Shape : (10000, 10000)
Chunk Shape : (1000, 1000)
Order : C
Read-Only : false
Compressor : Zarr.BloscCompressor(0, 3, "zstd", 1)
Filters : nothing
Store type : Dictionary Storage
No. bytes : 400000000
No. bytes stored : 2412289
Storage ratio : 165.81761140559857
Chunks initialized : 100/100
```
Subexpression:
zinfo(z)
Evaluated output:
Type : ZArray
Data type : Int32
Shape : (10000, 10000)
Chunk Shape : (1000, 1000)
Order : C
Read-Only : false
Compressor : Zarr.BloscCompressor(0, 3, "zstd", 1)
Filters : nothing
Store type : Dictionary Storage
No. bytes : 400000000
No. bytes stored : 0
Storage ratio : Inf
Chunks initialized : 0/100
Expected output:
Type : ZArray
Data type : Int32
Shape : (10000, 10000)
Chunk Shape : (1000, 1000)
Order : C
Read-Only : false
Compressor : Zarr.BloscCompressor(0, 3, "zstd", 1)
Filters : nothing
Store type : Dictionary Storage
No. bytes : 400000000
No. bytes stored : 2412289
Storage ratio : 165.81761140559857
Chunks initialized : 100/100
diff =
Warning: Diff output requires color.
Type : ZArray
Data type : Int32
Shape : (10000, 10000)
Chunk Shape : (1000, 1000)
Order : C
Read-Only : false
Compressor : Zarr.BloscCompressor(0, 3, "zstd", 1)
Filters : nothing
Store type : Dictionary Storage
No. bytes : 400000000
No. bytes stored : 2412289
0
Storage ratio : 165.81761140559857
Inf
Chunks initialized : 100/1000/100
|
Documentation:
docs/src/missings.md#L61
doctest failure in src/missings.md:61-75
```jldoctest fillval
julia> z = zopen(p, fill_as_missing=true)
ZArray{Union{Missing, Int64}} of size 100 x 100
julia> eltype(z)
Union{Missing, Int64}
julia> z[8:12,1]
5-element reshape(::Matrix{Union{Missing, Int64}}, 5) with eltype Union{Missing, Int64}:
missing
missing
missing
5
5
```
Subexpression:
z[8:12,1]
Evaluated output:
5-element Vector{Union{Missing, Int64}}:
missing
missing
missing
5
5
Expected output:
5-element reshape(::Matrix{Union{Missing, Int64}}, 5) with eltype Union{Missing, Int64}:
missing
missing
missing
5
5
diff =
Warning: Diff output requires color.
5-element reshape(::Matrix{Union{Missing, Int64}}, 5) with eltype Union{Missing, Int64}:
Vector{Union{Missing, Int64}}:
missing
missing
missing
5
5
|
Documentation
Process completed with exit code 1.
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