Add do_MIRI flag to initialise variables

PROCESS/initialise_variables.R

@@ -42,7 +42,7 @@ initialise_params = function(){
    do_claws = FALSE, 
 
    ## Path to reference astrometric catalogue - to make the ProPane stacks
-   tweak_catalogue = "~/Desktop/astro.csv",
+   tweak_catalogue = NULL, ## NULL will have no internal tweak
 
    NAXIS_long = NULL, ## Size of the long pixel scales mosaic, keep NULL for default (3000 pixels) 
    NAXIS_short = NULL ## Size of the short pixel scales mosaic, keep NULL for default (6000 pixels) 

initialise_env.sh

@@ -6,10 +6,13 @@ export JUMPROPE_CRDS_CONTEXT='jwst_1140.pmap'
 
 #export JUMPROPE_REF_DIR='/Volumes/Expansion/JWST/prof' ## I recommend you keep this commented. Only add when you are certain the directory structure has been made. The code will auto prompt you to create it on first run.
 export JUMPROPE_RAW_DIR='/Volumes/Expansion/JWST/'
+
 export JUMPROPE_do_NIRISS=F
-export JUMPROPE_cores_pro=6 #Number of cores to use for 1/f, sky subtr, wisp rem
-export JUMPROPE_cores_stack=6 #Number of cores to use internally for propaneWarpStackInVar
-export JUMPROPE_tasks_stack=6 #Number of stacking tasks to run
+export JUMPROPE_do_MIRI=F
+
+export JUMPROPE_cores_pro=1 #Number of cores to use for 1/f, sky subtr, wisp rem
+export JUMPROPE_cores_stack=1 #Number of cores to use internally for propaneWarpStackInVar
+export JUMPROPE_tasks_stack=1 #Number of stacking tasks to run
 
 
 # e.g., If I have 20 cal files to process, I could set cores_pro = 5 and only do 4 lots of computations.