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typo update path
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neelie01 committed Mar 28, 2023
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Expand Up @@ -45,11 +45,11 @@ The .jar file was built using Java version 17.0.5. One can build the tool for ot
## Running jar
Simple Example:

`java -jar classicoV2.jar --snptable Data/mini_snp.tsv --nwk Data/mini_nwk.nwk --out Data`
`java -jar src/classicoV2.jar --snptable Data/mini_snp.tsv --nwk Data/mini_nwk.nwk --out Data`

Advanced example with resolution of unresolved bases:

`java -jar classicoV2.jar --snptable Data/mini_snp.tsv --nwk Data/mini_nwk.nwk --out Data --resolve --method cladewise --relmaxdepth 0.5`
`java -jar src/classicoV2.jar --snptable Data/mini_snp.tsv --nwk Data/mini_nwk.nwk --out Data --resolve --method cladewise --relmaxdepth 0.5`


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