This repository contains the code used to analyse the compound perturbation RNAseq data. The processing starts with the sequencing files and then uses salmon and a pre-build index to align the sequences to the transcriptome (see salmon commands here). From there, these files are fed into DESeq2 for quantification (see a sample script for the SUM159 cells).
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Code to Analyse the Kinase Perturbation Drug Data
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IDG-Kinase/kinase_perturbation
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Code to Analyse the Kinase Perturbation Drug Data
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