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16 Open 9 Closed
16 Open 9 Closed
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Issues list

Cell barcode IDs for processed ATAC SummarizedExperiment objects
#28 opened Oct 14, 2021 by andrewjkwok
scRNA cell type annotation marker
#27 opened Oct 11, 2021 by dhoneyi
1
Label transfer from RNA to ATAC
#26 opened Apr 7, 2021 by RegnerM2015
Antibody features in raw 10x Bam Files provided in the repository link
#25 opened Jan 8, 2021 by GAgafencu
Cannot find the definition of the function "keepFilteredChromosomes"
#24 opened Nov 23, 2020 by YangLi-Bio
Error in lsiProjection
#23 opened Aug 24, 2020 by pbrazda
nn_index in scRNA-Projection-UMAP.zip is empty or not compatible with uwot 0.1.8 and RcppAnnoy 0.0.16
#22 opened Aug 24, 2020 by wangmeijiao
1
About the reference genome used in scRNA
#21 opened Aug 8, 2020 by hahia
LASSO penalty issue in customized gene activity score calculation
#19 opened Jun 11, 2020 by wangmeijiao
Runtime of getting UMAP reductions
#18 opened May 4, 2020 by mohit1997
4
CLR assay missing in scADT-All-Hematopoiesis-MPAL-191120.rds
#17 opened Apr 17, 2020 by rargelaguet
1
How did you compose those pretty scentific figures ?
#15 opened Apr 12, 2020 by wangmeijiao
4
Where is the bam file for scATAC-seq data?
#14 opened Mar 22, 2020 by eravza
6
Code for creating differentiual_Summary objects is missing
#11 opened Feb 14, 2020 by CSBioAzim
1
optimizeLSI for scRNA-seq gives Error in if (n < 0L) max(length(x) + n, 0L) else min(n, length(x)) :
#10 opened Feb 2, 2020 by CSBioAzim
AML cells LSI projection and reclassification
#6 opened Dec 17, 2019 by eldadshulman
2
ProTip! Follow long discussions with comments:>50.