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updated requirements files
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marufr committed Nov 28, 2024
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86 changes: 24 additions & 62 deletions installation/sira_env.yml
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@@ -1,65 +1,27 @@
name: sira_env
channels:
- conda-forge
- default
- conda-forge
- nodefaults
dependencies:
- pip=21.3.1
- awscli=1.21.9
- brewer2mpl=1.4.1
- codecov=2.1.11
- colorama=0.4.3
- configparser=5.0.2
- coverage=6.1.1
- docutils=0.15.2
- freetype=2.10.4
- graphviz=2.49.1
- ipython=7.32.0
- jupyterlab=3.2.1
- imagecodecs=2021.8.26
- imageio=2.9.0
- imagesize=1.2.0
- latexcodec=2.0.1
- lmfit=1.0.3
- matplotlib=3.4.3
- netcdf4=1.5.8
- networkx=2.6.3
- notebook=6.4.5
- numpy=1.22.2
- openpyxl=3.0.9
- pandas=1.3.4
- parmap=1.5.3
- pillow=8.3.2
- pycairo=1.20.1
- pycparser=2.20
- pygments=2.10.0
- pylint=2.11.1
- pytest=6.2.5
- pytest-cov=3.0.0
- python-graphviz=0.17
- python-igraph=0.9.8
- python-libarchive-c
- requests=2.26.0
- s3transfer=0.5.0
- scikit-image=0.18.3
- scikit-learn=1.0.1
- scipy=1.7.1
- seaborn=0.11.2
- sqlalchemy=1.4.26
- xlrd=2.0.1
- xorg-libxrender=0.9.10
- xorg-libxpm=3.5.13
- pip:
- actdiag==2.0.0
- alabaster==0.7.12
- blockdiag==2.0.1
- pybtex==0.22.2
- pybtex-docutils==0.2.2
- seqdiag==2.0.0
- sphinx==3.2.1
- sphinx-rtd-theme==0.5.0
- sphinxcontrib-actdiag==2.0.0
- sphinxcontrib-bibtex==1.0.0
- sphinxcontrib-blockdiag==2.0.0
- sphinxcontrib-jsmath==1.0.1
- sphinxcontrib-seqdiag==2.0.0
- sphinxcontrib-websupport==1.2.4
- python=3.11
- graphviz
- pygraphviz
- python-graphviz
- python-libarchive-c
- imagecodecs
- xorg-libxrender
- xorg-libxpm
- pylatexenc
- python-igraph>=0.11
- doxygen
- freetype
- numpy
- scipy
- scikit-learn
- umap-learn
- bokeh
- panel
- holoviews
- hvplot
- param
- folium
169 changes: 105 additions & 64 deletions installation/sira_req.txt
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@@ -1,65 +1,106 @@
actdiag==2.0.0
alabaster==0.7.12
awscli>=1.20.0
blockdiag==2.0.1
botocore~=1.22.0
brewer2mpl==1.4.1
colorama>=0.4.3
configparser==5.0.2
coveralls
actdiag
alabaster
adjustText
awscli
babel
blockdiag
botocore
brewer2mpl
cairocffi
cartopy
codecov
colorama
colorcet
configparser
contextily
coverage[toml]
docutils>=0.15.2
flake8==4.0.1
funcparserlib==0.3.5
graphviz==0.17
imagecodecs==2022.2.22
imageio==2.10.1
imagesize==1.2.0
ipaddress==1.0.23
ipython>=8.1.1
Jinja2>=3.0.2
jupyterlab>=3.2.1
latexcodec==2.0.1
libarchive-c==3.1
lmfit==1.0.3
matplotlib==3.4.3
netcdf4==1.5.8
networkx==2.6.3
numpy==1.22.2
openpyxl>=3.0.9
pandas==1.3.4
parmap==1.5.3
pathlib==1.0.1
Pillow>=8.4.0
pybtex==0.24.0
pybtex-docutils==1.0.1
pycairo==1.20.1
pycparser==2.20
Pygments==2.10.0
pygraphviz==1.7
pylint==2.11.1
pyparsing==3.0.4
pytest==6.2.5
pytest-cov==3.0.0
python-dateutil==2.8.2
python-igraph>=0.9.0
pyyaml>=5.4.0
requests>=2.24.0
s3transfer>=0.5.0
scikit-image==0.18.3
scikit-learn==1.0.1
scipy==1.7.1
seaborn==0.11.2
seqdiag==2.0.0
Sphinx==4.2.0
sphinx-rtd-theme==0.5.0
sphinxcontrib-actdiag==2.0.0
sphinxcontrib-bibtex==2.4.1
sphinxcontrib-blockdiag==2.0.0
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-seqdiag==2.0.0
sphinxcontrib-websupport==1.2.4
toml==0.10.2
tornado==6.1
xlrd==2.0.1
pyarrow
dash
dask
dask[dataframe]
decorator
docutils
fiona
flake8
funcparserlib
geopandas
geoplot
imagecodecs
imageio
imagesize
ipympl
ipython
ipywidgets
Jinja2
jupyter_bokeh
jupyter-dash
jupyterlab
jupyterlab-katex
katex
kneed
linkify-it-py
lmfit
matplotlib
mdit-py-plugins
mdurl
mpmath
netcdf4
networkx
nodejs
notebook
numba
openpyxl
oset
pandas
parmap
pillow
pip
plotly
pyarrow
pybtex
pybtex-docutils
pycodestyle
pycparser
pyflakes
pygments
pylint
pyparsing
pyproj
pyqt5-sip
pyqtchart
pyqtwebengine
pytest
pytest-cov
python-dateutil
python-dotenv
pyyaml
requests
s3transfer
seaborn
seqdiag
shapely
Sphinx
sphinxcontrib-actdiag
sphinxcontrib-bibtex
sphinxcontrib-blockdiag
sphinxcontrib-devhelp
sphinxcontrib-htmlhelp
sphinxcontrib-jsmath
sphinxcontrib-qthelp
sphinxcontrib-seqdiag
sphinxcontrib-serializinghtml
sphinxcontrib-websupport
sphinx-rtd-theme
sqlalchemy
sympy
toml
tornado
tqdm
uc-micro-py
utm
webcolors
widgetsnbextension
xlrd
xlsxwriter
xyzservices
yellowbrick
zstandard

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