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Merge main into develop #63

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Commits on May 5, 2024

  1. eclipse-rdf4jGH-4920 SPARQLConnection.size() method should not fetch … 

    …every statement in the repository. Just send a count query instead.

Signed-off-by: Jerven Bolleman <[email protected]>
    @JervenBolleman
    JervenBolleman committed May 5, 2024
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Commits on May 11, 2024

  1. eclipse-rdf4jGH-4920 When sending the remote size query make sure we … 

    …don't send null,

or RDF4J nill
    @JervenBolleman
    JervenBolleman committed May 11, 2024
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Commits on May 31, 2024

  1. eclipse-rdf4jGH-4920 Make the logic that distinguises between countin… 

    …g from the remote default graph, or a dataset clearer
    @JervenBolleman
    JervenBolleman committed May 31, 2024
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Commits on Jun 6, 2024

  1. eclipse-rdf4jGH-5024 Fix 'nuclear' delete bug in RDF4JTemplate.delete… 

    …(IRI, List<PropertyPath>)
    @fkleedorfer
    fkleedorfer committed Jun 6, 2024
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Commits on Jun 20, 2024

  1. next development iteration: 5.0.1-SNAPSHOT (eclipse-rdf4j#5044)

    @hmottestad
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  2. javadocs for 5.0.0 (eclipse-rdf4j#5046) 

    * javadocs for 5.0.0

* fix milestone and release script
    @hmottestad
    hmottestad authored Jun 20, 2024
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  3. added info about shacl

    @hmottestad
    hmottestad committed Jun 20, 2024
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  4. Update 5.0.0.md

    @JervenBolleman @hmottestad
    JervenBolleman authored and hmottestad committed Jun 20, 2024
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  5. Update 5.0.0.md release notes for federation improvements

    @aschwarte10 @hmottestad
    aschwarte10 authored and hmottestad committed Jun 20, 2024
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  6. updates to the release notes

    @hmottestad
    hmottestad committed Jun 20, 2024
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  7. updates to the release notes

    @hmottestad
    hmottestad committed Jun 20, 2024
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  8. 5.0.0 Release Notes (eclipse-rdf4j#5025)

    @hmottestad
    hmottestad authored Jun 20, 2024
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Commits on Jun 23, 2024

  1. eclipse-rdf4jGH-5048: updated spring dependency to fix CVEs 

    Signed-off-by: Bart Hanssens <[email protected]>
    @barthanssens
    barthanssens committed Jun 23, 2024
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Commits on Jun 28, 2024

  1. eclipse-rdf4jGH-4784 switched approach for deadlock prevention (eclip… 

    …se-rdf4j#5001)

* simplify deadlock detection

* switch away from ReentrantLock

* new lock manager with a reentrant lock that supports unlocking from seperate thread

* improved tests
    @hmottestad
    hmottestad authored Jun 28, 2024
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  2. eclipse-rdf4jGH-5059 remove calls to E(...) when the return value is … 

    …already being checked
    @hmottestad
    hmottestad committed Jun 28, 2024
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Commits on Jun 30, 2024

  1. eclipse-rdf4jGH-5055 make mapdb3 default for the FedX engine as well 

    Signed-off-by: Jerven Bolleman <[email protected]>
    @JervenBolleman
    JervenBolleman committed Jun 30, 2024
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  2. eclipse-rdf4jGH-5050: add netty dependency management to fix CVEs (ec… 

    …lipse-rdf4j#5051)

Signed-off-by: Bart Hanssens <[email protected]>
    @barthanssens
    barthanssens authored Jun 30, 2024
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Commits on Jul 1, 2024

  1. eclipse-rdf4jGH-5060: use more recent version of zookeeper to fix CVE (… 

    …eclipse-rdf4j#5062)

Signed-off-by: Bart Hanssens <[email protected]>
    @barthanssens
    barthanssens authored Jul 1, 2024
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Commits on Jul 5, 2024

  1. Un-deprecate RDFa parser setting

    @edwardsph
    edwardsph committed Jul 5, 2024
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Commits on Jul 6, 2024

  1. eclipse-rdf4jGH-4779: Un-deprecate RDFa parser setting (eclipse-rdf4j… 

    …#5069)
    @hmottestad
    hmottestad authored Jul 6, 2024
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Commits on Jul 9, 2024

  1. eclipse-rdf4jGH-5052: use more recent version of snappy to fix CVEs (e… 

    …clipse-rdf4j#5065)

eclipse-rdf4jGH-5052: upgrade snappy dependency to fix CVE
    @barthanssens
    barthanssens authored Jul 9, 2024
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  2. eclipse-rdf4jGH-5059 improve error handling and logging

    @hmottestad
    hmottestad committed Jul 9, 2024
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  3. eclipse-rdf4jGH-5048: updated spring dependency to fix CVEs (eclipse-… 

    …rdf4j#5049)
    @hmottestad
    hmottestad authored Jul 9, 2024
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  4. eclipse-rdf4jGH-5059 remove calls to E(...) when the return value is … 

    …already being checked (eclipse-rdf4j#5066)
    @hmottestad
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  5. eclipse-rdf4jGH-5024 Fix 'nuclear' delete bug in RDF4JTemplate.delete… 

    …(IRI, List) (eclipse-rdf4j#5026)
    @hmottestad
    hmottestad authored Jul 9, 2024
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  6. fix minor code formatting issues

    @hmottestad
    hmottestad committed Jul 9, 2024
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  7. eclipse-rdf4jGH-5024 Fix 'nuclear' delete bug in RDF4JTemplate.delete… 

    …(IRI, List) (eclipse-rdf4j#5070)
    @hmottestad
    hmottestad authored Jul 9, 2024
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  8. release 5.0.1 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
    hmottestad committed Jul 9, 2024
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  9. next development iteration: 5.0.2-SNAPSHOT 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
    hmottestad committed Jul 9, 2024
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  10. javadocs for 5.0.1 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
    hmottestad committed Jul 9, 2024
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  11. news item and release-notes if relevant for 5.0.1 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
    hmottestad committed Jul 9, 2024
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  12. update release notes

    @hmottestad
    hmottestad committed Jul 9, 2024
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  13. next development iteration: 5.0.2-SNAPSHOT (eclipse-rdf4j#5071)

    @hmottestad
    hmottestad authored Jul 9, 2024
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Commits on Jul 10, 2024

  1. update release notes

    @hmottestad
    hmottestad committed Jul 10, 2024
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  2. eclipse-rdf4jGH-5073: added note on CVEs 

    Signed-off-by: Bart Hanssens <[email protected]>
    @barthanssens
    barthanssens committed Jul 10, 2024
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  3. eclipse-rdf4jGH-5073: added note on CVEs (eclipse-rdf4j#5074)

    @hmottestad
    hmottestad authored Jul 10, 2024
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  4. 5.0.1-release-notes (eclipse-rdf4j#5073)

    @hmottestad
    hmottestad authored Jul 10, 2024
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Commits on Jul 18, 2024

  1. eclipse-rdf4jGH-5053: avoid log spam for configurations class with le… 

    …gacy settings

When there is only a value for the legacy setting (i.e. the new config
setting is not used) we now log on level debug. Otherwise on warn.

The rational is: when users still have persisted legacy repository
configurations, the log is easily spammed with warnings.
    @aschwarte10
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Commits on Aug 2, 2024

  1. eclipse-rdf4jGH-5095 add tests to verify that startRdf and endRdf are… 

    … called at the correct time
    @hmottestad
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  2. eclipse-rdf4jGH-5095 correctly call startRDF() and endRDF() when pars… 

    …ing json-ld
    @hmottestad
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  3. eclipse-rdf4jGH-5095 Correctly call startRDF() and endRDF*() when par… 

    …sing JSON-LD (eclipse-rdf4j#5096)
    @hmottestad
    hmottestad authored Aug 2, 2024
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  4. improve release script to delay calling jenkins until we know that th… 

    …e build went through correctly, also improve the automation by reducing the number of times you need to press any key to continue
    @hmottestad
    hmottestad committed Aug 2, 2024
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  5. Improve release script (eclipse-rdf4j#5097)

    @hmottestad
    hmottestad authored Aug 2, 2024
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  6. release 5.0.2 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
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  7. next development iteration: 5.0.3-SNAPSHOT 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
    hmottestad committed Aug 2, 2024
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  8. javadocs for 5.0.2 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
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  9. news item and release-notes if relevant for 5.0.2 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
    hmottestad committed Aug 2, 2024
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  10. next development iteration: 5.0.3-SNAPSHOT (eclipse-rdf4j#5098)

    @hmottestad
    hmottestad authored Aug 2, 2024
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Commits on Aug 3, 2024

  1. update release notes, news item and downloads file

    @hmottestad
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  2. add release notes and javadocs for rdf4j 4.3.13

    @hmottestad
    hmottestad committed Aug 3, 2024
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  3. update script

    @hmottestad
    hmottestad committed Aug 3, 2024
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  4. 5.0.2-release-notes (eclipse-rdf4j#5102)

    @hmottestad
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Commits on Aug 12, 2024

  1. eclipse-rdf4jGH-5053: avoid log spam for configurations class with le… 

    …gacy settings (eclipse-rdf4j#5077)
    @aschwarte10
    aschwarte10 authored Aug 12, 2024
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  2. eclipse-rdf4jGH-5105: make MonitoringImpl in FedX thread safe 

    The monitoring service in FedX is a useful tool for evaluations /
benchmarks to inspect the number of requests sent to the endpoints.

This change makes the implementation thread safe.
    @aschwarte10
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Commits on Aug 13, 2024

  1. eclipse-rdf4jGH-5105: make MonitoringImpl in FedX thread safe (eclips… 

    …e-rdf4j#5106)
    @aschwarte10
    aschwarte10 authored Aug 13, 2024
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Commits on Aug 14, 2024

  1. eclipse-rdf4jGH-5108 add a java system property to modify the limit f… 

    …or when we can still use SPARQL validation approach with sh:maxCount
    @hmottestad
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  2. eclipse-rdf4jGH-5108 add a java system property to modify the limit f… 

    …or when we can still use SPARQL validation approach with sh:maxCount (eclipse-rdf4j#5109)
    @hmottestad
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Commits on Aug 26, 2024

  1. eclipse-rdf4jGH-5112 add test cases

    @hmottestad
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  2. eclipse-rdf4jGH-5112 fix for sh:pattern difference between SPARQL and… 

    … transactional validation
    @hmottestad
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  3. closes eclipse-rdf4jGH-5113

    @hmottestad
    hmottestad committed Aug 26, 2024
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  4. closes eclipse-rdf4jGH-5114 fix for SPARQL constraint values being null

    @hmottestad
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  5. closes eclipse-rdf4jGH-5115 fix for bug where sh:class could cause mi… 

    …ssing validation results when nested sh:property and sh:node
    @hmottestad
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Commits on Aug 27, 2024

  1. optimize imports

    @hmottestad
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  2. eclipse-rdf4jGH-5112 various bugs related to the ShaclSail (eclipse-r… 

    …df4j#5117)
    @hmottestad
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Commits on Aug 29, 2024

  1. wip

    @hmottestad
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  2. wip

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Commits on Sep 18, 2024

  1. eclipse-rdf4jGH-5115 Fix for performance issues with ShaclSail after … 

    …fix for compressed validation tuples (eclipse-rdf4j#5119)
    @hmottestad
    hmottestad authored Sep 18, 2024
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  2. Update merge_main_to_develop.yml

    @hmottestad
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  3. Update merge_main_to_develop.yml (eclipse-rdf4j#5128)

    @hmottestad
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Commits on Oct 2, 2024

  1. javadocs

    @hmottestad
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  2. news item and release-notes if relevant for 4.3.14 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
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  3. updated download.md

    @hmottestad
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  4. updated release notes

    @hmottestad
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Commits on Oct 3, 2024

  1. Bump commons-io:commons-io from 2.11.0 to 2.14.0 

    Bumps commons-io:commons-io from 2.11.0 to 2.14.0.

---
updated-dependencies:
- dependency-name: commons-io:commons-io
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <[email protected]>
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  2. Bump commons-io:commons-io from 2.11.0 to 2.14.0 (eclipse-rdf4j#5146)

    @hmottestad
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Commits on Oct 10, 2024

  1. eclipse-rdf4jGH-5148 Introduce "soft fail" for corrupt ValueStore

    @ebner
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  2. eclipse-rdf4jGH-5148 Fixed typo

    @ebner
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Commits on Oct 18, 2024

  1. eclipse-rdf4jGH-5153 benchmarks

    @hmottestad
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  2. eclipse-rdf4jGH-5153 reduced default threshold for using SPARQL based… 

    … validation of sh:maxCount to sh:maxCount=1 or below
    @hmottestad
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Commits on Oct 21, 2024

  1. eclipse-rdf4jGH-5153 early detection of object equality when comparin… 

    …g Values or getting the effective boolean value
    @hmottestad
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  2. eclipse-rdf4jGH-5153 max count cut off for sparql based validation (e… 

    …clipse-rdf4j#5154)
    @hmottestad
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Commits on Oct 22, 2024

  1. 4.3.14 release notes (eclipse-rdf4j#5144)

    @hmottestad
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Commits on Oct 23, 2024

  1. eclipse-rdf4jGH-5148 Introduce "soft fail" for corrupt ValueStore (ec… 

    …lipse-rdf4j#5150)
    @hmottestad
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  2. eclipse-rdf4jGH-5148 fixes based on review

    @hmottestad
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  3. eclipse-rdf4jGH-5148 add tests and extend corruption handling to more… 

    … parts of the code
    @hmottestad
    hmottestad committed Oct 23, 2024
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  4. eclipse-rdf4jGH-5148 corrupt data can be written as NQuads

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    hmottestad committed Oct 23, 2024
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Commits on Oct 24, 2024

  1. eclipse-rdf4jGH-5148 add support for more files in the test cases and… 

    … add a fix for when the corruption causes large amounts of data to be read
    @hmottestad
    hmottestad committed Oct 24, 2024
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  2. eclipse-rdf4jGH-5148 improved soft fail on corruption for values.id a… 

    …nd values.hash files.
    @hmottestad
    hmottestad committed Oct 24, 2024
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  3. eclipse-rdf4jGH-5148 improved handling of corrupt spoc/posc/... indexes

    @hmottestad
    hmottestad committed Oct 24, 2024
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  4. eclipse-rdf4jGH-5148 cleanup naming and docs

    @hmottestad
    hmottestad committed Oct 24, 2024
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Commits on Oct 28, 2024

  1. eclipse-rdf4jGH-5148 better detection of non-empty b-tree

    @hmottestad
    hmottestad committed Oct 28, 2024
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Commits on Nov 2, 2024

  1. eclipse-rdf4jGH-5159 close child of GroupIterator

    @frensjan
    frensjan committed Nov 2, 2024
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Commits on Nov 3, 2024

  1. eclipse-rdf4jGH-5159 close child of GroupIterator (eclipse-rdf4j#5160)

    @hmottestad
    hmottestad authored Nov 3, 2024
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Commits on Nov 7, 2024

  1. eclipse-rdf4jGH-5167 test cases

    @hmottestad
    hmottestad committed Nov 7, 2024
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  2. eclipse-rdf4jGH-5167 correctly handle rsx:targetShape with complex paths

    @hmottestad
    hmottestad committed Nov 7, 2024
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  3. javadocs 4.3.15

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    hmottestad committed Nov 7, 2024
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  4. news item and release-notes if relevant for 4.3.15 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
    hmottestad committed Nov 7, 2024
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  5. update release notes and downloads

    @hmottestad
    hmottestad committed Nov 7, 2024
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  6. eclipse-rdf4jGH-5167 bug fix for exception with complex path in rsx:t… 

    …argetShape (eclipse-rdf4j#5177)
    @hmottestad
    hmottestad authored Nov 7, 2024
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Commits on Nov 8, 2024

  1. 4.3.15 release notes 2 (eclipse-rdf4j#5187)

    @hmottestad
    hmottestad authored Nov 8, 2024
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Commits on Nov 10, 2024

  1. eclipse-rdf4jGH-4920 SPARQLConnection.size() now uses count query (ec… 

    …lipse-rdf4j#4972)
    @hmottestad
    hmottestad authored Nov 10, 2024
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  2. eclipse-rdf4jGH-5148 improved error message

    @hmottestad
    hmottestad committed Nov 10, 2024
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  3. improve javadocs and make some tests more robust

    @hmottestad
    hmottestad committed Nov 10, 2024
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  4. eclipse-rdf4jGH-5148 Introduce "soft fail" for corrupt ValueStore (ec… 

    …lipse-rdf4j#5157)
    @hmottestad
    hmottestad authored Nov 10, 2024
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  5. javadocs for 5.1.0-M1 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
    hmottestad committed Nov 10, 2024
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  6. news item and release-notes if relevant for 5.1.0-M1 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
    hmottestad committed Nov 10, 2024
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  7. release 5.0.3 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
    hmottestad committed Nov 10, 2024
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  8. next development iteration: 5.0.4-SNAPSHOT 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
    hmottestad committed Nov 10, 2024
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  9. javadocs for 5.0.3 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
    hmottestad committed Nov 10, 2024
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  10. news item and release-notes if relevant for 5.0.3 

    Signed-off-by: Håvard Ottestad <[email protected]>
    @hmottestad
    hmottestad committed Nov 10, 2024
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  11. next development iteration: 5.0.4-SNAPSHOT (eclipse-rdf4j#5193)

    @hmottestad
    hmottestad authored Nov 10, 2024
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  12. 5.1.0-M1-release-notes (eclipse-rdf4j#5192)

    @hmottestad
    hmottestad authored Nov 10, 2024
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Commits on Nov 11, 2024

  1. update download.md

    @hmottestad
    hmottestad committed Nov 11, 2024
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  2. update release notes

    @hmottestad
    hmottestad committed Nov 11, 2024
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  3. 5.0.3 release notes (eclipse-rdf4j#5196)

    @hmottestad
    hmottestad authored Nov 11, 2024
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