➕ Reorient resources to set orientation in config#2168

Merged

shnizzedy merged 37 commits intohotfix/1.8.7-1from hotfix/1.8.7-reorient

Dec 12, 2024

+178-183

Commits on Dec 11, 2024

➕ orientation checks for resources added to PipeConfigs

Biraj Shrestha
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Update CPAC/pipeline/engine.py

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Update CPAC/pipeline/engine.py

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Update CPAC/pipeline/engine.py

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Update CPAC/pipeline/engine.py

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Update CPAC/pipeline/engine.py

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Update CPAC/pipeline/utils.py

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Update CPAC/pipeline/utils.py

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Update CPAC/pipeline/utils.py

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Update CPAC/pipeline/utils.py

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adding desired-orientation as a config key

Biraj Shrestha
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[pre-commit.ci] auto fixes from pre-commit.com hooks

pre-commit-ci[bot]
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reorienting all files before rpool initialization

birajstha
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[pre-commit.ci] auto fixes from pre-commit.com hooks

pre-commit-ci[bot]
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moved orientation check and reorient if necessary to the wf

birajstha
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renaming output name correctly

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handle for read-only template files

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adding reorient nodes in anat, func, freesurfer and template ingress nodes

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fix a typo in orientation flag for resample

birajstha
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[pre-commit.ci] auto fixes from pre-commit.com hooks

pre-commit-ci[bot]
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updating the orientation flag at other places where resolve_resolution is being used

birajstha
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reverting adding reorient node at the very begining and passing orientation set in config in the existing nodes for reorientations

birajstha
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[pre-commit.ci] auto fixes from pre-commit.com hooks

pre-commit-ci[bot]
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empty

birajstha
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updated tests

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updated the changelog

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replaced RPI to take in config value in few more places

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adding cfg as parameter in lesion_preproc

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sending only orientation not all cfg

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fixed positions of args in lesion_preproc and added default RPI

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Update CHANGELOG.md

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Update CHANGELOG.md

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Update CHANGELOG.md

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fixing pre-commit suggestions

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👷 Skip pre-commit CI
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🔀 Update autoversioning script from develop branch
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✏️ Fix repeated .dev3
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