Bring in NOMAD examples (#27)

* Nexus eln examples * Updates north + pynxtools apm test branch * Implementing fixes for EM and APM examples in NOMAD * Pluginise pynxtools * initial commit for nomad entrypoints * typo fix in MANIFEST.in * bring in additional changes from SprintNomadBaseSectionEmApmFixes branch * add integration tests for nomad example entrypoints * linting of entrypoints * missing closing bracket * return archive dict in testing function * fix pyproject.toml * use relative path in tests * bump ruff to >v0.6 * update dev-requirements and pre-commit * platform-independent dev-requirements * update dev-requirements * use resource in ExampleUploadEntryPoint * linting * ruff 0.8 formatting * bump ruff * update nomad exmaple tests * move some test functionality to pynxtools * update MANIFEST * simplify nomad import test in test_nomad_examples * CI: install nomad with infrastructure extra and test also with python 3.12 * fix typo in CI/CD * update pynxtools dependency * update pynxtools in dev-requirements --------- Co-authored-by: Sherjeel Shabih <[email protected]> Co-authored-by: Florian Dobener <[email protected]> Co-authored-by: Sandor Brockhauser <[email protected]> Co-authored-by: Markus Kuehbach <[email protected]> Co-authored-by: mkuehbach <[email protected]>
FAIRmat-NFDI · Dec 3, 2024 · 28368b4 · 28368b4
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diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml
@@ -33,6 +33,10 @@ jobs:
         run: |
           curl -LsSf https://astral.sh/uv/install.sh | sh
           uv pip install coverage coveralls
+      - name: Install nomad
+        if: "${{ matrix.python_version != '3.8'}}"
+        run: |
+          uv pip install nomad-lab[infrastructure]@git+https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR.git
       - name: Install package
         run: |
           uv pip install ".[dev]"

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -1,7 +1,7 @@
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.5.5
+    rev: v0.8.0
     hooks:
       # Run the linter.
       - id: ruff

diff --git a/MANIFEST.in b/MANIFEST.in
@@ -0,0 +1,5 @@
+prune *
+exclude *
+recursive-include src/pynxtools_apm *.py
+include pyproject.toml README.md dev-requirements.txt
+graft src/pynxtools_apm/nomad/examples